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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04637.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22426 Da PI: 7.937 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3e-26 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs++gkl+e Rsa1.0_04637.1_g00002.1 9 KRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFEL 57 79********************************************996 PP | |||||||
2 | K-box | 52.8 | 1.7e-18 | 92 | 170 | 11 | 89 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 + ++ + e++ Lk+eie+Lq+ +R + G + + ++l+eL Le++Le +++iRs K+e++l++i+ l++k +e+++ Rsa1.0_04637.1_g00002.1 92 KPQNHDPKDEVNVLKQEIEMLQKGIRYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMEIMLQEIQSLRNKIEENNN 170 455667799****************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-28 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.506 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.65E-39 | 3 | 72 | No hit | No description |
Pfam | PF00319 | 4.1E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-17 | 94 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.481 | 95 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVRGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK 60 GTMEGVIDKY MKCTSGGCSS SSATYTAQEQ LKPQNHDPKD EVNVLKQEIE MLQKGIRYMF 120 GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MEIMLQEIQS LRNKIEENNN SILYANLATV 180 ETNYSYPLAM PNEIFQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-16 | 3 | 70 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-16 | 3 | 70 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-16 | 3 | 70 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-16 | 3 | 70 | 2 | 68 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04637.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228190 | 0.0 | AK228190.1 Arabidopsis thaliana mRNA for MADS-box protein AGL12, complete cds, clone: RAFL14-63-K22. | |||
GenBank | ATU20193 | 0.0 | U20193.1 Arabidopsis thaliana MADS-box protein AGL12 (AGL12) mRNA, complete cds. | |||
GenBank | BT006157 | 0.0 | BT006157.1 Arabidopsis thaliana clone RAFL17-04-C08 (R50439) putative MADS-box protein (At1g71692) mRNA, complete cds. | |||
GenBank | BT008332 | 0.0 | BT008332.1 Arabidopsis thaliana At1g71692 gene, complete cds. | |||
GenBank | BT008524 | 0.0 | BT008524.1 Arabidopsis thaliana clone U50439 putative MADS-box protein (At1g71692) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010427993.1 | 1e-118 | PREDICTED: agamous-like MADS-box protein AGL12 | ||||
Swissprot | Q38841 | 1e-117 | AGL12_ARATH; Agamous-like MADS-box protein AGL12 | ||||
TrEMBL | A0A087HHI5 | 1e-116 | A0A087HHI5_ARAAL; Uncharacterized protein | ||||
STRING | XP_010427993.1 | 1e-117 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7052 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-108 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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