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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02823.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23387.1 Da PI: 8.7566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.7e-15 | 15 | 67 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h+e+Er+RR+++ s f Lr +lP+ ++K s ++ + +Av+YIk+L+ Rsa1.0_02823.1_g00003.1 15 KRAKHKEIERQRRQELTSLFKHLRYILPSqY---VKGKRSSSDHVHEAVNYIKDLE 67 79***************************66...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-15 | 12 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.40E-9 | 12 | 71 | No hit | No description |
PROSITE profile | PS50888 | 13.668 | 14 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-12 | 15 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 15 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.008 | 20 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTDEITKEVV EPKNKRAKHK EIERQRRQEL TSLFKHLRYI LPSQYVKGKR SSSDHVHEAV 60 NYIKDLEKKI EEFSEKRDRI KKSITHPSPA GYCPIRSLAA SCSSSSLSSY CSCVGDTHID 120 VKVRSCLIGI EIVASCCFRH ESRLSTVLQL LVQEQCFNVV SCISTRLHLR FLHTIVCEVE 180 KGIQINFSEL QEKIIKMGTS CLIF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 26 | KRAKHKEIERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02823.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481731.1 | 1e-145 | PREDICTED: transcription factor bHLH55 isoform X1 | ||||
Swissprot | Q9LN95 | 1e-95 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | A0A3P5YDB8 | 1e-110 | A0A3P5YDB8_BRACM; Uncharacterized protein | ||||
STRING | Bo5g016800.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 2e-90 | bHLH family protein |
Publications ? help Back to Top | |||
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