PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02377.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 379aa    MW: 43121.7 Da    PI: 8.3714
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02377.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.31e-2389191186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                              +Wt+ +v++Li a+ +++++ ++ +                +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k
  Rsa1.0_02377.1_g00007.1  89 KWTDTMVRLLIMAVFYIGDEGGAVNdqaeakkktgggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGK 174
                              7**************99999997655667788999999999********************************************* PP

                 trihelix  71 r.tsessstcpyfdqle 86 
                              + +++++++  ++d ++
  Rsa1.0_02377.1_g00007.1 175 GtACRVVENQGLLDTMD 191
                              *55999***99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2187218No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLTLEMPQNP PNPPVQFQHP HPYSNSSDQH PHQQPSKPSY PHTSKAIQLS PLSGGDDEDR  60
GSGSGSGCHL EDSSGTDGKR RVSQWHRMKW TDTMVRLLIM AVFYIGDEGG AVNDQAEAKK  120
KTGGGGGMLQ KKGKWKSVSR AMVEKGFSVS PQQCEDKFND LNKRYKRVND ILGKGTACRV  180
VENQGLLDTM DHHLTPKLKE EVKKLISSKH LFFKEMCAYH NSCGSHLEQP SLAPSHHHVA  240
EAESDTEAED SEEEETSKKR RRVEGVSVAV KCMSEETARV LDDPGKSAWE KKEWMRRKAL  300
EFEERKVGYE WEAVEMEKKR VKWMSYRSKK EGEMEKAKLE NQRRMLETER MVLILRRREI  360
ELAELQSLGK RFDPSSATG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258262KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02377.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462976.10.0PREDICTED: trihelix transcription factor GT-3a-like
TrEMBLA0A398A0E50.0A0A398A0E5_BRACM; Uncharacterized protein
TrEMBLM4CAR10.0M4CAR1_BRARP; Uncharacterized protein
STRINGBra001290.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-84sequence-specific DNA binding transcription factors