PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01815.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 933aa MW: 103584 Da PI: 8.675

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01815.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.3	3.9e-06	59	115	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F+ + +s++e +e+++ g++ +qV+ +F +++k kk Rsa1.0_01815.1_g00004.1 59 KRPRDLLNPKAVKYMQTVFAIKDSISKKESREISALFGISVAQVRDFFATQKIKVKK 115 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.151	56	116	IPR001356	Homeobox domain
SMART	SM00389	2.2E-4	58	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	59	122	IPR009057	Homeodomain-like
CDD	cd00086	9.12E-4	59	116	No hit	No description
SuperFamily	SSF46689	2.65E-5	59	124	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLNSQKMLFH SQIDQLQDAV VTQCKLTGAA GALSIKIGKR 60 PRDLLNPKAV KYMQTVFAIK DSISKKESRE ISALFGISVA QVRDFFATQK IKVKKQVRLS 120 REKLMMSTTH AIQGDGVMEQ NNAVPHAEPL PLNSIDPEAS SISCGEGETA ALMPKEDVQE 180 EGIPPDISDS DKYFVDNIFS MLRREETFLG QMKLMEWIMQ IQDSSVLIWF LSKGGVLILT 240 TWLSQAATEE QTSVLLLILK VLCHLPLHKA SPENMSAILQ SVNGLRFYRT SGVIPENVLC 300 CVSFINVKVR IVISLVSLSD LMIRHIKQGK SIAEIMGDKT NPEDILSISN GRSENGRRLK 360 SSQGPKLLLT SADDSTRKHM LGSTPSYNKE RRKVQMVEQP GQKAAGRGPQ TVRIGTSGRS 420 RPMSADDIQK AKMRALYMNS KNIKKDTLPS AIGDTRTVVP EKPLAIQSVK DSPPSQSNEA 480 KTENTPELSA VQFPPSQNNE AKTEDKPEPS AVQQPVTVNV LVQPVNSPAV NVPVQADEFR 540 NRKLSTPPKS ISSKVGVLSR MSPQTILKNC KREQIEWHVP PGMVLDELWR VAAGANSKEA 600 DVQKNRNRRE KETTYQSLQT IPLNPKEPWD REMDFDDSLT PEIPSQQPQE ESITEPQDSL 660 DERRTAAGAA STSSSQSSSV EPDYELLAAL LKNPDLLHAL TSGQPGNLAG QDMVKLLDVI 720 KTGAPNLSSS SNMKVEEQVE VSLPSPTPST NPGMSGWGQE VTRNPFSRQT QVGASVARMS 780 TRLRVASMQW QPSNGQSIPQ HTPSAYNSFT LPHTERQHQQ RMQPRLHQNQ HLQQQPISTT 840 SYVVRESVGK MDIGTSASWR SQQSQNSYYS HQANGIGSDA SYQGNEQYMT SSNPGYESWS 900 PDNSPSRNHP NMRGQQQPSR KHDPYWNQNK RWR

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLNSQKMLFH SQIDQLQDAV VTQCKLTGAA GALSIKIGKR  60
PRDLLNPKAV KYMQTVFAIK DSISKKESRE ISALFGISVA QVRDFFATQK IKVKKQVRLS  120
REKLMMSTTH AIQGDGVMEQ NNAVPHAEPL PLNSIDPEAS SISCGEGETA ALMPKEDVQE  180
EGIPPDISDS DKYFVDNIFS MLRREETFLG QMKLMEWIMQ IQDSSVLIWF LSKGGVLILT  240
TWLSQAATEE QTSVLLLILK VLCHLPLHKA SPENMSAILQ SVNGLRFYRT SGVIPENVLC  300
CVSFINVKVR IVISLVSLSD LMIRHIKQGK SIAEIMGDKT NPEDILSISN GRSENGRRLK  360
SSQGPKLLLT SADDSTRKHM LGSTPSYNKE RRKVQMVEQP GQKAAGRGPQ TVRIGTSGRS  420
RPMSADDIQK AKMRALYMNS KNIKKDTLPS AIGDTRTVVP EKPLAIQSVK DSPPSQSNEA  480
KTENTPELSA VQFPPSQNNE AKTEDKPEPS AVQQPVTVNV LVQPVNSPAV NVPVQADEFR  540
NRKLSTPPKS ISSKVGVLSR MSPQTILKNC KREQIEWHVP PGMVLDELWR VAAGANSKEA  600
DVQKNRNRRE KETTYQSLQT IPLNPKEPWD REMDFDDSLT PEIPSQQPQE ESITEPQDSL  660
DERRTAAGAA STSSSQSSSV EPDYELLAAL LKNPDLLHAL TSGQPGNLAG QDMVKLLDVI  720
KTGAPNLSSS SNMKVEEQVE VSLPSPTPST NPGMSGWGQE VTRNPFSRQT QVGASVARMS  780
TRLRVASMQW QPSNGQSIPQ HTPSAYNSFT LPHTERQHQQ RMQPRLHQNQ HLQQQPISTT  840
SYVVRESVGK MDIGTSASWR SQQSQNSYYS HQANGIGSDA SYQGNEQYMT SSNPGYESWS  900
PDNSPSRNHP NMRGQQQPSR KHDPYWNQNK RWR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01815.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471087.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X2
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A3N6SCE0	0.0	A0A3N6SCE0_BRACR; Uncharacterized protein
STRING	Bo2g100790.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]