PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00892.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 446aa    MW: 50469.6 Da    PI: 6.5496
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00892.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.8e-12256312155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ ++++gr++A+++d  ++  g+++r + g ++ +e+Aa+a++ a+ k++g
  Rsa1.0_00892.1_g00005.1 256 SQYRGVTKHRWTGRYEAHLWDnSCKkEGQTRRGRQGGYDDEEKAARAYDLAAIKYWG 312
                              78*******************77665555677777889999**************98 PP
2AP247.25.6e-15355406155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Rsa1.0_00892.1_g00005.1 355 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-20256322No hitNo description
PfamPF008472.8E-8256312IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-15256322IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-13257321IPR001471AP2/ERF domain
PROSITE profilePS5103217.596257320IPR001471AP2/ERF domain
SMARTSM003801.4E-23257326IPR001471AP2/ERF domain
PRINTSPR003677.2E-6258269IPR001471AP2/ERF domain
PfamPF008478.4E-10355406IPR001471AP2/ERF domain
CDDcd000187.31E-26355415No hitNo description
SuperFamilySSF541711.37E-17355414IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-18356414IPR001471AP2/ERF domain
PROSITE profilePS5103219.019356414IPR001471AP2/ERF domain
SMARTSM003802.1E-33356420IPR001471AP2/ERF domain
PRINTSPR003677.2E-6396416IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNKWLGFSLT PHLRISDRVQ EEDEEQHRHE ENYVVSNQQK ALMPLNSDGS LFFTDHLTHP  60
PPPVWQYDIN LNHDDHHHQD EEVPKLEDFF SNSHQTECTP ISSHDQTNVN CTTMVNILSP  120
PGYLFHEPTV ATPQLSNLNP SLSHDYEGSV SVFKSWLMQG TPTFPVSNTY VSEEGSTSNT  180
SNFSHEDTDY NTSGSTLLLA MSHGAASDLI NELNVNVPVK EAVKVDEKRK SLVGKSQVKE  240
PVEPRKSVDS LGQRTSQYRG VTKHRWTGRY EAHLWDNSCK KEGQTRRGRQ GGYDDEEKAA  300
RAYDLAAIKY WGPTTHLNFP LSNYEKEMEE LNNMTRQEFV AMLRRNSSGF SRGASIYRGV  360
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDICRYDV  420
KRICSTSTII NSDQAKRSPS SSASGQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00892.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127942.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A398AAY10.0A0A398AAY1_BRACM; Uncharacterized protein
TrEMBLM4CUZ50.0M4CUZ5_BRARP; Uncharacterized protein
STRINGBra008040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]