PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00876.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 347aa    MW: 37947.4 Da    PI: 6.7849
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00876.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.34.7e-691152752154
                   DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.. 78 
                              r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a       +    +r+ ++  
  Rsa1.0_00876.1_g00004.1 115 RHGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSRDAssgcgddD---DDREGDEng 197
                              6899****************************************************999998888766765431...222222234 PP

                   DUF702  79 ...kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                      sal++ ++++a+s+  +e s+lP+evs +avfrc+rvss++d++ee+aYqtavsigGhvfkGiLydqG+++
  Rsa1.0_00876.1_g00004.1 198 gqgGGGGGSALACIRVVNASSS-GFESSHLPPEVSLPAVFRCMRVSSIEDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 275
                              44456778999****9999765.99***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.9E-63118274IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-25225273IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAGLFYLGGR DNNKQDHHHQ DKDHNEDRSN NYLHLYKDEI SNNNKGFEIW PPQYFQQQQE  60
QQNHLAHPTN FYSFGMVPGG SSHNNNRSSN RSLYFNVVPD HEPVRSSTGR FTVTRHGSMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA GLPTKRSRDA  180
SSGCGDDDDD REGDENGGQG GGGGGSALAC IRVVNASSSG FESSHLPPEV SLPAVFRCMR  240
VSSIEDEDEE YAYQTAVSIG GHVFKGILYD QGPSDDHRYS SSPAAAAVET SQHHLNLLAS  300
ASSVATTTAV TASNIINASI DHSSVYTAAP INSFITPATS FFASPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00876.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052680.0GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484700.10.0PREDICTED: protein SHI RELATED SEQUENCE 7
RefseqXP_018484708.10.0PREDICTED: protein SHI RELATED SEQUENCE 7
SwissprotQ9FXH71e-179SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLD2KC770.0D2KC77_BRARP; Short internode related sequence 7
STRINGBra025768.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-146SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]