PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00853.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 27996 Da    PI: 5.029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00853.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182375456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++f++eq++ Le  F+++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Rsa1.0_00853.1_g00002.1 23 QRRFSDEQIKSLEMRFKSETRLEPRKMVQLARELGLQPRQVAIWFQNKRARWK 75
                             579*************************************************9 PP
2HD-ZIP_I/II117.67.2e-3822112292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              ++rr+s+eq+k+LE+ F++e++Lep++ v+lareLglqprqva+WFqn+RAR+ktkqlE++++ L+++y+ l+++ e+L+ke++ L
  Rsa1.0_00853.1_g00002.1  22 NQRRFSDEQIKSLEMRFKSETRLEPRKMVQLARELGLQPRQVAIWFQNKRARWKTKQLETEFNILRQNYNDLASQFESLKKENQGL 107
                              68************************************************************************************ PP

              HD-ZIP_I/II  88 reelk 92 
                               +el+
  Rsa1.0_00853.1_g00002.1 108 VSELH 112
                              99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.6171777IPR001356Homeobox domain
SuperFamilySSF466899.39E-171979IPR009057Homeodomain-like
SMARTSM003891.9E-142081IPR001356Homeobox domain
CDDcd000862.15E-132378No hitNo description
Gene3DG3DSA:1.10.10.602.4E-172383IPR009057Homeodomain-like
PfamPF000464.3E-162375IPR001356Homeobox domain
PRINTSPR000315.6E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000315.6E-55773IPR000047Helix-turn-helix motif
PfamPF021833.3E-1377117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMSADPFMTM KKMKKSIHNE NNQRRFSDEQ IKSLEMRFKS ETRLEPRKMV QLARELGLQP  60
RQVAIWFQNK RARWKTKQLE TEFNILRQNY NDLASQFESL KKENQGLVSE LHILNEERQT  120
KQDERRHCCD GQGVVTLGST DHESEKEENR RSEPEEVRPE MEVYEKSRHD DDDGYNNNIK  180
REYFVGFEEE ADHLMNIVEP ADSCLTSSDD WGGFKSNTNL LDQSSSNYPW WDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00853.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528710.0AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481377.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-128ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3P6CDA91e-142A0A3P6CDA9_BRACM; Uncharacterized protein
STRINGBo4g197260.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-115homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]