PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00810.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 351aa    MW: 37964.2 Da    PI: 5.6568
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00810.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.3e-07436436
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                             + C+ +++  + l+C+ +  +lC +C ++ H  
  Rsa1.0_00810.1_g00007.1  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                             58***************************9954 PP
2zf-B_box27.56.6e-094691342
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Rsa1.0_00810.1_g00007.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                             689*****************************66899999*99986 PP
3CCT705.9e-24282325144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Rsa1.0_00810.1_g00007.1 282 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 325
                              9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006433.0E-5443IPR000315B-box-type zinc finger
CDDcd000215.48E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.3E-74691IPR000315B-box-type zinc finger
CDDcd000216.05E-104791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767282324IPR010402CCT domain
PfamPF062036.8E-18282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSD SDGSAKHAAV NFLDDCYFSD  120
LDGNASREEE DEAASWLLPN PKTAALATAV PGDEPEMNTG QQYMFTDPDP YLDYGTVDPK  180
VESQEQNSSG TTDGVVPVEN RTVKVATAVN ENCYEIDFTG GSKGFTYGYN SISHSVSSSS  240
LEVGVVPDGG SVADVSYPYG GAATSVTDPG TQRAVPLTAA EREARVMRYR EKRKNRKFEK  300
TIRYASRKAY AEMRPRIKGR FAKRTDTNES NDVVVGHGGG IFSGFGLVPT F
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00810.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485056.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X1
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLM4D0080.0M4D008_BRARP; Uncharacterized protein
STRINGBra009805.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4