PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00302.1_g00018.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 263aa MW: 28230.5 Da PI: 10.1045

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00302.1_g00018.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	42	226	2	120
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s+ +s + Rsa1.0_00302.1_g00018.1 42 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSVRGNS-TVI 126 789*************************************************************999997773333332222.222 PP TCP 88 g...................................................................kaaksaa.kskksqksaa 105 + + a +++ ++++q++aa Rsa1.0_00302.1_g00018.1 127 SasancalssssldhkpppllgsspfilgkrlrgdddsgkeetmgsfatpagfwavparqdfgqvwsfA-AHQEMfLQQQQQQPAA 211 233445555666677778888888888888888888888888889999999999999999999998844.4444436777777777 PP TCP 106 salnlakesrakara 120 +al ++++++++a + Rsa1.0_00302.1_g00018.1 212 AALFVHQQQQQQAAM 226 667777666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-34	48	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSNNNNEGVM ISNGSLIEHQ RQHQQQQQQL NQKQSSDGGA LAVKKPPAKD RHSKVDGRGR 60 RIRMPIICAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTASVSVR 120 GNSTVISASA NCALSSSSLD HKPPPLLGSS PFILGKRLRG DDDSGKEETM GSFATPAGFW 180 AVPARQDFGQ VWSFAAHQEM FLQQQQQQPA AAALFVHQQQ QQQAAMGEAS AARVGNYLPG 240 HLNLLASLSG GAPGSGRRED DQR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00302.1_g00018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	2e-34	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	AK118679	2e-34	AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03.
GenBank	CP002688	2e-34	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485264.1	1e-164	PREDICTED: transcription factor TCP7-like
Refseq	XP_018485265.1	1e-164	PREDICTED: transcription factor TCP7-like
Refseq	XP_018485270.1	1e-164	PREDICTED: transcription factor TCP7-like
Refseq	XP_018485271.1	1e-164	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-112	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A3P6ET61	1e-140	A0A3P6ET61_BRAOL; Uncharacterized protein
STRING	Bo7g097790.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-63	TCP family protein