PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00269.1_g00020.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 310aa MW: 33279.4 Da PI: 8.0396

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00269.1_g00020.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.7	3.1e-68	86	237	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsal 86 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql+ +++ + + ++ +kr+r++ + + Rsa1.0_00269.1_g00020.1 86 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHISTAGDGGGSgGSSIPKRHRDT---ALPGT 168 67899*************************************************9999888766578888888885...67778 PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ss++l+s ++ e+ ++s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG e+ Rsa1.0_00269.1_g00020.1 169 SSSRLPSDSAGLETGKASFPPEVSSDALFRCVKLSGVDDgGDGQYAYQTTVNIGGHIFKGILYDQGSES 237 889999*****************************8899*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-61	89	236	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-27	187	234	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGMYSLGGN NNNGDEEGNQ QQQKTNWVWY RSNTNTNNIN PSSSVWQIPP EQQILMHHHQ 60 PHPQQQSIDL YPGHQIDVSD LATSSRSITI SCRDCGNQAK KDCTHMRCRT CCKSRGFDCS 120 THVRSTWIPV ARRRERQQQL HISTAGDGGG SGGSSIPKRH RDTALPGTSS SRLPSDSAGL 180 ETGKASFPPE VSSDALFRCV KLSGVDDGGD GQYAYQTTVN IGGHIFKGIL YDQGSESSHM 240 SGGSGGSDHH SSSAGGGNTF NTPAIAGGGR GGRGSSAMFV DPNSSSYYSS NMMTMFVPPG 300 TQFYQNPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00269.1_g00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205265	0.0	GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481321.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 2-like
Swissprot	O65517	1e-144	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	A0A3P6A9X6	1e-169	A0A3P6A9X6_BRACM; Uncharacterized protein
TrEMBL	M4DML9	1e-169	M4DML9_BRARP; Uncharacterized protein
STRING	Bra017754.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-111	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]