PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00039.1_g00013.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 394aa MW: 42613.8 Da PI: 8.352

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00039.1_g00013.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.7e-39	69	128	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s Rsa1.0_00039.1_g00013.1 69 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 128 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-35	57	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	70	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MGLTSLQVCM DSDWLQEAES GGSMLDSTTT SPSAADILAA CSTQPQVSAV AVAAAAMMDG 60 GRRLRPPHDH PQKCPRCEST HTKFCYYNNY SLSQPRYFCK TCRRYWTKGG TLRNIPVGGG 120 CRKNKKPSSS NTSSSKKPSS DLMALAHSHQ NYQNASLGFS HFGGNGMMGS YTAPDHSNVG 180 FLESKYGSLF SQSPRPIDFL DGKFDLMGVN NNLVMVDHGS NGDHQHNHHM GLSHGLGLNN 240 NNNGGLMDIS TCQRLILNNY DHHHYNHHED NQRVTSVMDV KPSPKLLSLD WQQEQGYSEG 300 SGNGGGGRSD GSGYGGGGGY INSLAGSTFV SSSMKNNGFS SLKDAVWAAL CYFLGGFILL 360 CMELLVKNRW VKVGLSIAIT SMVIGVAIFS KEKK

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MGLTSLQVCM DSDWLQEAES GGSMLDSTTT SPSAADILAA CSTQPQVSAV AVAAAAMMDG  60
GRRLRPPHDH PQKCPRCEST HTKFCYYNNY SLSQPRYFCK TCRRYWTKGG TLRNIPVGGG  120
CRKNKKPSSS NTSSSKKPSS DLMALAHSHQ NYQNASLGFS HFGGNGMMGS YTAPDHSNVG  180
FLESKYGSLF SQSPRPIDFL DGKFDLMGVN NNLVMVDHGS NGDHQHNHHM GLSHGLGLNN  240
NNNGGLMDIS TCQRLILNNY DHHHYNHHED NQRVTSVMDV KPSPKLLSLD WQQEQGYSEG  300
SGNGGGGRSD GSGYGGGGGY INSLAGSTFV SSSMKNNGFS SLKDAVWAAL CYFLGGFILL  360
CMELLVKNRW VKVGLSIAIT SMVIGVAIFS KEKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00039.1_g00013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228992	1e-154	AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBank	BT020467	1e-154	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	1e-154	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452806.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
Swissprot	Q9FM03	1e-145	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A0D3E1Y0	1e-169	A0A0D3E1Y0_BRAOL; Uncharacterized protein
STRING	Bo9g016320.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-131	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]