PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00037.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 312aa    MW: 33448.3 Da    PI: 5.9731
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00037.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.33.9e-68862422154
                   DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskk 82 
                              rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s  +  +      ++ +kr+r++   +
  Rsa1.0_00037.1_g00011.1  86 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGGSgsgggGSSIPKRHRDT---T 168
                              67899****************************************************9998887776777667777777775...6 PP

                   DUF702  83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                                 + st l+s ++  e+e +s+P+evss+a+frcv++s+vdd  ++ ++aYqt+v+igGh+fkGiLydqG+e+
  Rsa1.0_00037.1_g00011.1 169 LPGTLSTDLPSDSAGLEIEEASFPPEVSSDALFRCVKMSGVDDggEDGQYAYQTTVNIGGHLFKGILYDQGPES 242
                              67778899999********************************766789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-6289241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2791133IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.109.5E-4120159No hitNo description
TIGRFAMsTIGR016243.4E-27191240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGMFSLGGN NNNGEEENQQ QEEKTNWVWY RSNTNTNNIN PSSSVWQIPP EQQLLMHHHQ  60
PQTQQQSLDL YPGHQIDVSD LATSSRSITI SCRDCGNQAK KDCTHMRCRT CCKSRGFDCS  120
THVRSTWIPV ARRRERQQQL HMSTSGGSGG SGSGGGGSSI PKRHRDTTLP GTLSTDLPSD  180
SAGLEIEEAS FPPEVSSDAL FRCVKMSGVD DGGEDGQYAY QTTVNIGGHL FKGILYDQGP  240
ESSYVSGGSG GSDHQSSSAG GGNPFNTPAV ADGGGGSSTM FVDPNSSGYY SSNMATMFAP  300
PGTQFYQNPP RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00037.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052640.0GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448425.10.0PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-149SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-163V4ME11_EUTSA; Uncharacterized protein
STRINGXP_006412014.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-135Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]