PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9409_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 286aa MW: 30615.8 Da PI: 8.9984

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9409_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	46	105	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s RrC9409_p1 46 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 105 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	34	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-33	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MLDSTTTSPS AADILAACST QPQASAVAVA AAAMMDGGRR LRPPHDHPQK CPRCESTHTK 60 FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK NKKPSSSNTS SSKKPSSDLM 120 ALAHSHQNYQ NASLGFSHFG GNGMMGSYTA PNHSNVGFLE SKYGGLFSQS PRPIDFLDGK 180 FDLMGVNNNL VMVDHGSNGD HQHNHHMGLS HGLGLNNNNN NDNQRVTSVM DVKPSPKLLS 240 LDWQQEQGYS EGSGNGGGGR SDGSGYGGGG GYINSLGSSW NSLMNG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB009053	1e-129	AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBank	AK228992	1e-129	AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBank	BT020467	1e-129	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	1e-129	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	CP002688	1e-129	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452806.1	1e-154	PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBL	A0A0D3E1Y0	1e-135	A0A0D3E1Y0_BRAOL; Uncharacterized protein
TrEMBL	M4F473	1e-135	M4F473_BRARP; Uncharacterized protein
STRING	Bra035873.1-P	1e-136	(Brassica rapa)
STRING	Bo9g016320.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-101	Dof family protein