PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9163_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 604aa MW: 67182.6 Da PI: 7.9581

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9163_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	30.8	6e-10	349	374	15	40
TCR 15 kkYCeCfaagkkCseeCkCedCkNke 40 +YCeCfaag++C e C+C dC+Nk RrC9163_p2 349 ENYCECFAAGVYCIEPCSCVDCFNKP 374 68**********************96 PP
2	TCR	46.4	7.7e-15	421	459	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+ CnCkks+ClkkYCeCf++g+ Cs +C+ e+CkN RrC9163_p2 421 RHKRVCNCKKSNCLKKYCECFQSGVGCSINCRYEGCKNA 459 58999*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	29.735	341	461	IPR005172	CRC domain
Pfam	PF03638	1.6E-6	349	373	IPR005172	CRC domain
SMART	SM01114	2.6E-4	350	376	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	5.2E-13	421	462	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.9E-10	424	459	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
DSPVFNFINN LSPIEAVRSI STAHTFNSLC FTSPPPVFTS PHPTFHRESR FFSWYNRLSF 60 FNQSSCSSCF SIGWFCIVVS VSKEEVEDLN KDASLEEEEE EMSSELPHIL NDSPCMPNLS 120 EPPPGESVSY SEDFKVSLLK LLDAQEENDT PARRRLISDA AELLVFRSPC DSEAFQCLVD 180 TVSSSERRSS QTKQHDVTKD VQANGYCNDN EPLAVGTNQV NTGIHPVPSL HRGSMRRRCL 240 DFEGTGKRKK DDQQTVYDNK AESSSKHVAP GIGLHLNAIA MVSRDSKINV RLTSGAIQKS 300 FSDSNTPVQS QDSLLESLDQ GEHEPGEESA VEELNPGSLR KKQAFLLQEN YCECFAAGVY 360 CIEPCSCVDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RNSDSITEVG DDASKTPASA 420 RHKRVCNCKK SNCLKKYCEC FQSGVGCSIN CRYEGCKNAF GRKDANKRRI TRNMSEVHQK 480 YKKIKKSSRT QPFLSKNRLP PTQFFLGAGS SSFRKPDSDL TQSRNEKKPL DTVTEEKTEN 540 MPDILSINPI TTIKAIPPNS KRVSPPQPGS SEAGSVLVKR SNGRKLILRS IPAFPSLNPK 600 KSVK

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

DSPVFNFINN LSPIEAVRSI STAHTFNSLC FTSPPPVFTS PHPTFHRESR FFSWYNRLSF  60
FNQSSCSSCF SIGWFCIVVS VSKEEVEDLN KDASLEEEEE EMSSELPHIL NDSPCMPNLS  120
EPPPGESVSY SEDFKVSLLK LLDAQEENDT PARRRLISDA AELLVFRSPC DSEAFQCLVD  180
TVSSSERRSS QTKQHDVTKD VQANGYCNDN EPLAVGTNQV NTGIHPVPSL HRGSMRRRCL  240
DFEGTGKRKK DDQQTVYDNK AESSSKHVAP GIGLHLNAIA MVSRDSKINV RLTSGAIQKS  300
FSDSNTPVQS QDSLLESLDQ GEHEPGEESA VEELNPGSLR KKQAFLLQEN YCECFAAGVY  360
CIEPCSCVDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RNSDSITEVG DDASKTPASA  420
RHKRVCNCKK SNCLKKYCEC FQSGVGCSIN CRYEGCKNAF GRKDANKRRI TRNMSEVHQK  480
YKKIKKSSRT QPFLSKNRLP PTQFFLGAGS SSFRKPDSDL TQSRNEKKPL DTVTEEKTEN  540
MPDILSINPI TTIKAIPPNS KRVSPPQPGS SEAGSVLVKR SNGRKLILRS IPAFPSLNPK  600
KSVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	249	RRRCLDFEGTGKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF205142	1e-107	AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds.
GenBank	AY099653	1e-107	AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBank	AY128837	1e-107	AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587689.1	0.0	PREDICTED: CRC domain-containing protein TSO1
Refseq	XP_022557925.1	0.0	CRC domain-containing protein TSO1-like
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A078IU52	0.0	A0A078IU52_BRANA; BnaCnng27630D protein
TrEMBL	A0A0D3CH36	0.0	A0A0D3CH36_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EKS8	0.0	A0A3P6EKS8_BRAOL; Uncharacterized protein
STRING	Bo5g094500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]