PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC78_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 420aa    MW: 46671.4 Da    PI: 5.9836
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC78_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-075081334
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
               ++C+++++++++  C++++  lC++C    H
  RrC78_p2 50 SQICDNCGSEPVSVRCFTDGLVLCQECDWDVH 81
              689************************97777 PP
2CCT66.95.5e-23371414144
       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
               R++a++RYkeKrktR+++K+irYesRKa+A++R RvKGrFvk++
  RrC78_p2 371 RDNAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVKGRFVKAT 414
               899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-11552IPR000315B-box-type zinc finger
PROSITE profilePS501199.485552IPR000315B-box-type zinc finger
CDDcd000213.98E-7852No hitNo description
PROSITE profilePS501198.564881IPR000315B-box-type zinc finger
PfamPF006433.5E-55081IPR000315B-box-type zinc finger
CDDcd000213.15E-85281No hitNo description
SMARTSM003363.55396IPR000315B-box-type zinc finger
PfamPF062032.2E-17371413IPR010402CCT domain
PROSITE profilePS5101715.11371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSTTERVPC DFCNERAAVL FCRADTAKLC LPCDHHVHTA NLLSRKHVRS QICDNCGSEP  60
VSVRCFTDGL VLCQECDWDV HGSCSSVSDA HVRSVVEGFT GCPSALELAE LWGIDLEGMK  120
EEKKQVPMMM MMMESFGMQL DSWISGSDVM QQELVVPVPK ETTAFKKSGS TSCGRYKQVL  180
CKQLEELLKS GVVDGGDGEG EGERGEGTMV PEMRERLGWR RDEEEISGGG EVNQQQPQTT  240
SFTSLLWNAA NPSDVQRQST QSREPEDTSR VEAAAYDIKD AASFKIKKND TCSTKPKGVK  300
EICQDDYNQS TTSGQVPVTS ESSNLPITFG SEKGSNSSSE LHFAETITGA SSKTTRLVPT  360
KADLELLAQN RDNAMQRYKE KRKTRRYDKT IRYESRKARA DTRLRVKGRF VKATEAPYYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891941e-157AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447226.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLM4D3550.0M4D355_BRARP; Uncharacterized protein
STRINGBra010908.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]