PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6851_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 308aa    MW: 33133.3 Da    PI: 8.2266
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6851_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.92.6e-68872382154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 
                 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql+++++     +  ++ +kr+r++   +   +ss++l+s ++  e
  RrC6851_p1  87 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTAGGGGGSgGSSIPKRHRDT---TLPGTSSSRLPSDSAGLE 182
                 67899****************************************************999887766578888888886...667778899999*9**** PP

      DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                 + ++s+P+evss+a+frcv++s+vd+ g+ ++aYqt+v+igGh+fkGiLydqG+e+
  RrC6851_p1 183 TGKASFPPEVSSDALFRCVKLSGVDNgGDGQYAYQTTVNIGGHLFKGILYDQGPES 238
                 **************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-6190237IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-2792134IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.8E-27188236IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGMYSLGGN NTNGDEEEGK QQQQKTNWVW YRSNTNTNNI NPSSSIWQIP PEQQILMHNH  60
QPHPQQQSID LYTGHQIDVS DLATSSRSIT ISCRDCGNQA KKDCTHMRCR TCCKSRGFDC  120
STHVRSTWIP VARRRERQQQ LHMSTAGGGG GSGGSSIPKR HRDTTLPGTS SSRLPSDSAG  180
LETGKASFPP EVSSDALFRC VKLSGVDNGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSH  240
MSGGSGGSDH HSSSAGGGNT FNTPAIAGGR GGSSAMFVDP NSSSYYSSNM MTMFVPPGTQ  300
FYQNPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052650.0GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138417.11e-171PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-144SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLA0A3P6A9X61e-170A0A3P6A9X6_BRACM; Uncharacterized protein
TrEMBLM4DML91e-170M4DML9_BRARP; Uncharacterized protein
STRINGBra017754.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-121Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]