PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6210_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 229aa MW: 24195.5 Da PI: 6.2926

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6210_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.5	1.8e-68	1	157	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.....kskkqsalsstkls 92 ++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a + +r+ ++ sal++ +++ RrC6210_p3 1 MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSRDAssgcgddD---DDREGDEnggqgGGGGGSALACIRVV 96 68************************************************999998888766765431...2222222344445677899999 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +a+s+ +e s+lP+evs +avfrc+rvss++d++ee+aYqtavsigGhvfkGiLydqG+++ RrC6210_p3 97 NASSS-GFESSHLPPEVSLPAVFRCMRVSSIEDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 157 99765.99*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-62	1	156	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.1E-28	2	44	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-25	107	155	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNCQDCGNQA KKDCPHMRCR TCCKSRGFDC QTHVKSTWVP AAKRRERQAQ LAGLPTKRSR 60 DASSGCGDDD DDREGDENGG QGGGGGGSAL ACIRVVNASS SGFESSHLPP EVSLPAVFRC 120 MRVSSIEDED EEYAYQTAVS IGGHVFKGIL YDQGPSDDHR YSSSPAAAAV ETSQHHLNLL 180 ASASSVATTT AVTASNINNA SIDHSSVYTA APINSFITPA TSFFASPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205268	0.0	GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484700.1	1e-167	PREDICTED: protein SHI RELATED SEQUENCE 7
Refseq	XP_018484708.1	1e-167	PREDICTED: protein SHI RELATED SEQUENCE 7
Swissprot	Q9FXH7	1e-109	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	D2KC77	1e-138	D2KC77_BRARP; Short internode related sequence 7
STRING	Bra025768.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-95	SHI-related sequence 7

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]