PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4874_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 494aa    MW: 54890.2 Da    PI: 7.6393
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4874_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR439.3e-14132170241
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 ++k+CnCk s+Clk+YCeCfa+g++C+  C+C +C N+ e
  RrC4874_p1 132 KQKHCNCKASRCLKLYCECFASGSYCNG-CNCLKCLNNLE 170
                 79**************************.********976 PP
2TCR51.12.8e-16217256140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeC++a++ Cse+C+C dCkN e
  RrC4874_p1 217 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCRDCKNFE 256
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.3E-14131171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.419132257IPR005172CRC domain
PfamPF036382.1E-10133168IPR005172CRC domain
SMARTSM011143.0E-19217258IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-12220255IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MENSDQDLGS HRNQLARRLD FSVSAATEME MDSSQGSEKI LDSNPDQREG DFPPPPPGSE  60
DKRVKSPKPS PRSPVRSSAT ELSTPPQKSP PLHGFDHNPA KYRVSKQEPL TLTPGGMHRE  120
AESKDVTTTP SKQKHCNCKA SRCLKLYCEC FASGSYCNGC NCLKCLNNLE NETARQEAIT  180
ATLERNPDAF KPKIAGSPLG TKDLQEDVRH QLLILGKHSK GCHCKKSGCL KKYCECYQAN  240
VLCSENCRCR DCKNFEGSQE RNTLLHGPET YTQQQQQQTT NAALNRAVAT SGYLNPLQSR  300
KRKSKEALQS ARGSSAAGPH LIRNGDTSLF SVPNTCTYRS SLSNTIQPRH VKDLCALLVT  360
RSVDLANKRR KNEKDSTLDP ALRDDGNETN DSPDCVLDSD SVDEKPMSPA TRALMCDDEH  420
VIISEKETSA PRVKTSQEKE DAYTSSESYL EQERQILSSF RDYLIQFVNR GNIKGMDIKT  480
KTDPSRKEPP GDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3313326611132Protein lin-54 homolog
5fd3_B1e-3313326611132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728831e-125AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893211e-125AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456150.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
RefseqXP_018456153.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-180TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A3P6DP320.0A0A3P6DP32_BRAOL; Uncharacterized protein (Fragment)
STRINGBra036551.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-165Tesmin/TSO1-like CXC domain-containing protein