PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4497_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 526aa    MW: 58319.8 Da    PI: 7.6658
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4497_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.7e-14146183341
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 kk+CnCk s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  RrC4497_p1 146 KKHCNCKASRCLKLYCECFASGSYCDG-CNCVNCSNNLE 183
                 79*************************.********976 PP
2TCR51.61.8e-16229268140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeC++a++ Cs++C+C+dCkN e
  RrC4497_p1 229 KHSKGCHCKKSGCLKKYCECYQANVLCSDNCRCQDCKNFE 268
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-16144184IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.15145269IPR005172CRC domain
PfamPF036387.2E-11146181IPR005172CRC domain
SMARTSM011143.1E-19229270IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12232267IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEKSDHDLSS NRNPLARQLD FSAPAAGVET KMMDSSSQEG SEKNQSRSVI DSQGDQRDED  60
LSSQEPSGTD ELGVKSVEQP PRSPVRSLQT SATEDVTPPP QKPPVHRFSH HPLGKSRVRC  120
KQEPLTPRGQ QTTEAETKDG TPNKLKKHCN CKASRCLKLY CECFASGSYC DGCNCVNCSN  180
NLENETARQE AITGTLERNP DAFKPKIAGS PHGINDLQED VRQLLILGKH SKGCHCKKSG  240
CLKKYCECYQ ANVLCSDNCR CQDCKNFEGS EERHALLHGG SHHVSETYVQ HTTNAALNRA  300
VSTSGFLNTP ESRKRKSKDA SSAVPHLVQN KAVNRVIRNG DTSLFSIPNN KAVSGPPTCT  360
YRSSLSNTIQ PRHVRDLCTL LVTKSLDVEN KYTDKRRKHE KDPSLDPAQR HANEFNDSPD  420
CVLDSTRMDE KPVSPATRAL MCDDEHVITS EKETSARVKA SQEKEDVDTS SEIYLEKERQ  480
ILSSFRDFLI QLSNRGSIKG TNIKTNTNPS RKGPPDEEQG HRDSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-3314627811132Protein lin-54 homolog
5fd3_B6e-3314627811132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728831e-107AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893211e-107AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477256.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A3N6S7R50.0A0A3N6S7R5_BRACR; Uncharacterized protein (Fragment)
STRINGBra009859.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein