PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC34928_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 296aa    MW: 32179 Da    PI: 7.0322
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC34928_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.66.1e-09445439
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 r C+ + +  ++lfC+ +  +lC +C  ++H        H++
  RrC34928_p1  4 RQCDSCRSAAATLFCRADAAFLCGECDGKIHTAnklasrHER 45
                 68*****************************55666767765 PP
2zf-B_box26.31.6e-084691342
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  + C+ +e+ +++  Ce +   lC +C   +H+       H++v++
  RrC34928_p1 46 VWLCQVCEQAPAHVTCEADAASLCVTCDRDIHSAnplsrrHERVSV 91
                 689*****************************66888889998875 PP
3CCT68.91.4e-23241284144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  RrC34928_p1 241 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRT 284
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.5E-15148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.381148IPR000315B-box-type zinc finger
CDDcd000214.66E-9448No hitNo description
PfamPF006439.1E-7445IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0684491IPR000315B-box-type zinc finger
PfamPF006431.4E-64691IPR000315B-box-type zinc finger
CDDcd000211.29E-84791No hitNo description
SMARTSM003362.8E-104991IPR000315B-box-type zinc finger
PfamPF062032.0E-17241283IPR010402CCT domain
PROSITE profilePS5101716.618241283IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASRQCDSCR SAAATLFCRA DAAFLCGECD GKIHTANKLA SRHERVWLCQ VCEQAPAHVT  60
CEADAASLCV TCDRDIHSAN PLSRRHERVS VTPFYDAPAQ GGSPATTKSA ASSNLFGEDA  120
DVSMEAVSWL LPNPSVKEGV VVEIPNLFAD LDYSAVDPKM EASENSSGND GVVPVQTRAL  180
FLNEDYFNFD VSASKTTFPH GYSCINQTVS STSLEVPLVP EGGAVTTTNA TPAVQLSPAE  240
REARVLRYRE KRKNRKFEKT IRYASRKAYA EVRPRIKGRF AKRTDSRVYD GGGDVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0526900.0AF052690.1 Raphanus sativus CONSTANS-like 1 protein (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483777.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-143COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLO824310.0O82431_RAPSA; CONSTANS-like 1 protein
STRINGBo4g156090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-145CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]