PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC29514_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

DBB

Protein Properties

Length: 89aa MW: 9298.58 Da PI: 5.5225

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC29514_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.2	9.1e-10	19	58	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40 +r C+ +++ + fC+ ++ +lC C +++H H++v RrC29514_p1 19 ARSCDACKSASAAVFCRVDSAFLCIACDTSIHTFtrHERV 58 578*****************************55779876 PP
2	zf-B_box	21.4	5e-07	60	89	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ C+ + lC C + +H RrC29514_p1 60 LCEVCEQAPASVTCKADAASLCVACDSDIH 89 6*************************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.95	17	60	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-8	17	60	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.8E-8	20	58	IPR000315	B-box-type zinc finger
CDD	cd00021	3.32E-6	20	58	No hit	No description
PROSITE profile	PS50119	9.57	56	89	IPR000315	B-box-type zinc finger
CDD	cd00021	1.61E-5	60	89	No hit	No description
SMART	SM00336	1.4	61	89	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MGFGLESIKS LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCIACDTSIH TFTRHERVYL 60 CEVCEQAPAS VTCKADAASL CVACDSDIH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189479	5e-88	AC189479.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB081M20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449754.1	7e-55	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
Swissprot	Q9FHH8	5e-52	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A078J4C8	5e-52	A0A078J4C8_BRANA; BnaA02g35200D protein
TrEMBL	A0A3P6A2K9	5e-52	A0A3P6A2K9_BRACM; Uncharacterized protein
STRING	Bra020425.1-P	1e-52	(Brassica rapa)
STRING	Bo2g030190.1	2e-52	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2760	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-54	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]