PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2521_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 415aa    MW: 46463 Da    PI: 4.9824
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2521_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.33.7e-091356340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + +k+++++C  ++ +lC++C +  H+       H++v
  RrC2521_p2 13 ARACDSCVKKRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 56
                578*****************************657888888876 PP
2CCT68.12.4e-23357400144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  RrC2521_p2 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 400
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791158IPR000315B-box-type zinc finger
PfamPF006434.5E-81356IPR000315B-box-type zinc finger
CDDcd000213.26E-91458No hitNo description
PROSITE profilePS5101716.083357399IPR010402CCT domain
PfamPF062036.9E-18357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MKSLANAVGA KTARACDSCV KKRARWYCAA DDAFLCQSCD TLVHSANPLA RRHERVRLKS  60
ASPAVSKYTN HNHSPSCPPH EAATWHQGFT RKPRTPRGSG KKNNLSIFHD LVPEISAEDQ  120
TDSYEIEEQL ICQVPVLDPM VAEQFLNDVV EPKIEFPLMR IDDQEEEDNA ESCLNGFFPT  180
DMELEEFAAD VEILLGHGLD TESYAMEGLG LSNTEMFKIE KDEIEEEEGE ETKAMNMGIC  240
CGEDRDDGDG TLALELRFDH ESHNTYEEEA VKNVGVGCIK VKEEEQKNVL MLSLNYDSVI  300
STWGGQGPPW TSGEPPERDI DISDKPVVSM EINGGESQHK HYVGGCLPST GFGDGGREAR  360
VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA SLALSAANSP LGVNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367383RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466779.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A3P5YLY70.0A0A3P5YLY7_BRACM; Uncharacterized protein
STRINGBra024750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]