PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20334_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 402aa    MW: 45578.1 Da    PI: 5.4893
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20334_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-071356340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + +++++C  +  +lC++C  + H+       H++v
  RrC20334_p1 13 ARACDSCVKRRARWYCAADYAFLCHSCDGTVHSAnplarrHERV 56
                 578*****************************657888888876 PP
2CCT68.51.8e-23353396144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  RrC20334_p1 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 396
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2961158IPR000315B-box-type zinc finger
SMARTSM003361.6E-71158IPR000315B-box-type zinc finger
PfamPF006431.7E-51356IPR000315B-box-type zinc finger
CDDcd000216.15E-71458No hitNo description
PfamPF062035.2E-18353395IPR010402CCT domain
PROSITE profilePS5101716.083353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MKSLANVVGG KTARACDSCV KRRARWYCAA DYAFLCHSCD GTVHSANPLA RRHERVRLKS  60
ASPGHSSSSP PHPPTWHQGF TRKARTRRGG KKSHTMVFHD LVPEMSSEDQ SFEVEEQLIF  120
EVPVLNTMGD EQRLNEHMES KIELPLMSMC FKSSEEEDDN AESCLNGLFP TDIELAQFSA  180
DVEILLGGGA DREFHAMDEL GLGEILKIDK EEVEEEEEVA AIKVCDLDDA DETTPFEISF  240
EYEYSQRTTF KEEDEKEDVE KNMIDVGSVN EMSGSIKEEN NEKIHMLRLD YESVISTWGG  300
QGTPWTAHEP PQIDLNMLCC PTDSMVESGG EDHHHKYFRG LGLHMGDAGS GGREARVSRY  360
REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIAA AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363379RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459113.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A0D3ANZ70.0A0A0D3ANZ7_BRAOL; Uncharacterized protein
STRINGBo2g059000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]