PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1967_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CO-like

Protein Properties

Length: 390aa MW: 43530 Da PI: 6.4059

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1967_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.2	1.1e-05	6	38	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++kC+ + +++++C+ + lC +C ++ H+ RrC1967_p5 6 KPKCDYCATTQAIIYCKYDLAKLCLNCDVHVHS 38 689****99****************9994 PP
2	CCT	62.3	1.5e-21	333	376	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ RrC1967_p5 333 RNEAKLRYKEKKLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 376 99***************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.4E-8	4	51	IPR000315	B-box-type zinc finger
CDD	cd00021	0.00252	7	38	No hit	No description
PROSITE profile	PS51017	14.436	333	375	IPR010402	CCT domain
Pfam	PF06203	5.4E-16	333	375	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MSQNMKPKCD YCATTQAIIY CKYDLAKLCL NCDVHVHSPN PLSRRHMRSL ICDKCFSQPG 60 IIQCLDHKVS YCQGCQWHVS NCSALGHRLQ RLDPFSGCPS RTEFSRMWSS ILESSVSSSV 120 KPSIGSLPLV DPNNDMFNMS KVNELDDLIG SSYSVMSQNN TYIQNLSDQS SFFSGDSKGC 180 PDLLLKLEEG EEDLCEGLNL DNAPLNFDVG DDIICCSPQE HIESDHMLPN GLFVYKNIIS 240 VTDSNFTTDN PLEATSTGQK DCKSYQQSGP LQMNINIGLP LPTSPILFGQ INPNIKGHES 300 SVVDYQDCGM STGFIMSDSP WESNLDVGSP QARNEAKLRY KEKKLKRTFG KQIRYASRKA 360 RADTRKRVKG RFVKAGDNYD YDPSSPTTNQ

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MSQNMKPKCD YCATTQAIIY CKYDLAKLCL NCDVHVHSPN PLSRRHMRSL ICDKCFSQPG  60
IIQCLDHKVS YCQGCQWHVS NCSALGHRLQ RLDPFSGCPS RTEFSRMWSS ILESSVSSSV  120
KPSIGSLPLV DPNNDMFNMS KVNELDDLIG SSYSVMSQNN TYIQNLSDQS SFFSGDSKGC  180
PDLLLKLEEG EEDLCEGLNL DNAPLNFDVG DDIICCSPQE HIESDHMLPN GLFVYKNIIS  240
VTDSNFTTDN PLEATSTGQK DCKSYQQSGP LQMNINIGLP LPTSPILFGQ INPNIKGHES  300
SVVDYQDCGM STGFIMSDSP WESNLDVGSP QARNEAKLRY KEKKLKRTFG KQIRYASRKA  360
RADTRKRVKG RFVKAGDNYD YDPSSPTTNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438218.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 12
Swissprot	Q9LJ44	0.0	COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBL	A0A078J160	0.0	A0A078J160_BRANA; BnaA01g36580D protein
TrEMBL	A0A3P5ZWQ3	0.0	A0A3P5ZWQ3_BRACM; Uncharacterized protein
STRING	Bo1g105550.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5319	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-163	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ordoñez-Herrera N, et al. The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture. Plant Physiol., 2018. 176(2): p. 1327-1340 [PMID:29187570]