PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13622_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 330aa    MW: 36958.2 Da    PI: 8.2574
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13622_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.2e-141957241
          TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                 ++++C+Ck s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  RrC13622_p1 19 KQRHCKCKASRCLKLYCECFASGTYCNG-CNCLNCHNTLE 57
                 789*************************.********976 PP
2TCR48.41.8e-15103142140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k+++gCnCk+s Clk+YCeC+ a++ Cse+C+C dCkN e
  RrC13622_p1 103 KHSRGCNCKRSGCLKRYCECYGANVRCSENCRCRDCKNFE 142
                  5899**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.6E-151858IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.69219143IPR005172CRC domain
PfamPF036383.6E-112155IPR005172CRC domain
SMARTSM011141.1E-15103144IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-12106141IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKQSRSTRGD GRDDGTPSKQ RHCKCKASRC LKLYCECFAS GTYCNGCNCL NCHNTLEKET  60
ERQEAVKAIL ERNRDAFKLK IAGSTHGLND KQEDVSKLVT LGKHSRGCNC KRSGCLKRYC  120
ECYGANVRCS ENCRCRDCKN FEGSKEIQLT TSASVKRYLH PPELRIRNSA PHSVAAARGC  180
SSAFPHLFQN QTVDYVVRDG DTSLFTVPNN QAVSGSTTST CRSSLSNTTQ LPPGKELYSL  240
LVSKSVDVAN KMSEKDTVAP ERTSQEKEDK DRSSEVYAEQ EKQILSCFRD HLYQLLNRLG  300
GSIDGTNIQK ENTDPSRKEP EDEEQQTHRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-292014611126Protein lin-54 homolog
5fd3_B6e-292014611126Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433308.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY842e-98TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A398AIB21e-140A0A398AIB2_BRACM; Uncharacterized protein
STRINGBo2g158480.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-101Tesmin/TSO1-like CXC domain-containing protein