PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10705_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 316aa MW: 35510.9 Da PI: 9.1163

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10705_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.4e-55	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL +k+++++++ ++i++vd++k+ePw+Lp+k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+l++ ++ RrC10705_p1 16 LPPGFRFHPTDEELISYYLVNKIADQNFTG-KAIADVDLNKSEPWELPEKAKIGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNStTS 112 79***********************999.88***********99999************************************98788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 elvg+kktLvfy+grap+gekt+Wvmheyrl RrC10705_p1 113 ELVGMKKTLVFYRGRAPRGEKTSWVMHEYRL 143 89*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-63	13	165	IPR003441	NAC domain
PROSITE profile	PS51005	60.845	16	165	IPR003441	NAC domain
Pfam	PF02365	6.3E-29	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEQGDHQQQK KEVEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE 60 LPEKAKIGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT GKDKEILNST TSELVGMKKT 120 LVFYRGRAPR GEKTSWVMHE YRLHSKSSYR TSKQDEWVVC RVLKKAEATK KYISNSSSSA 180 SHHLQSHARA SILSTNNNNP NYSSDLLQLP AHLQPHTSLN INQTLMANAV HLAELSRVFR 240 ASTSSTMDAH QPLMSYNHMP VSGLNLNLGG GLVQPAPPAV SLEDVVAVTA SFHGQNGFGN 300 VEMSQCMDMD GYWPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	15	171	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	15	171	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	15	171	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	15	171	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	15	171	19	174	NAC domain-containing protein 19
3swm_B	1e-57	15	171	19	174	NAC domain-containing protein 19
3swm_C	1e-57	15	171	19	174	NAC domain-containing protein 19
3swm_D	1e-57	15	171	19	174	NAC domain-containing protein 19
3swp_A	1e-57	15	171	19	174	NAC domain-containing protein 19
3swp_B	1e-57	15	171	19	174	NAC domain-containing protein 19
3swp_C	1e-57	15	171	19	174	NAC domain-containing protein 19
3swp_D	1e-57	15	171	19	174	NAC domain-containing protein 19
4dul_A	1e-57	15	171	16	171	NAC domain-containing protein 19
4dul_B	1e-57	15	171	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006403	1e-140	AC006403.4 Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete sequence.
GenBank	CP002685	1e-140	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437172.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A0D3DVN0	0.0	A0A0D3DVN0_BRAOL; Uncharacterized protein
STRING	Bo8g099810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	0.0	NAC domain containing protein 38