PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10575_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 335aa MW: 37139.5 Da PI: 6.5019

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10575_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.3	1.1e-69	104	271	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........kskkqsals 87 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s+ +++++kr re +s ++ RrC10575_p1 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSSSSRetQNSNAKRLREVdgndndddkdHSGGGGSAL 201 7899****************************************************9999888855344444444446777776655566667888 PP DUF702 88 stklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 +t++++++s++ le+ ++lP+evss+avfrcvrvss+++ +++e+aYqtav+igGh+fkGiLydqG++e RrC10575_p1 202 ATRVVNTNSNSGLEAiQNLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPDE 271 889999998888775166***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-64	107	270	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.7E-28	109	151	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-26	220	269	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHQ DKSNYLYLYK DEICNTNKGF EIWPPQYFQQ QQEQQQHVTT 60 PTNFYSFGMI PSGSSSSNNN NNRSRGLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD 120 CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSSSSRE TQNSNAKRLR 180 EVDGNDNDDD KDHSGGGGSA LATRVVNTNS NSGLEAIQNL PPEVSSPAVF RCVRVSSIEE 240 DEDDQEYAYQ TAVNIGGHIF KGILYDQGPD EDHHHQLNLL ASTATTTNAE ETAAKTAVTI 300 AGNNNNGLIL DPSSLYPAQL NSFIAGTPFF TPPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444461.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5 isoform X2
Refseq	XP_018444462.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A3N6RKM8	0.0	A0A3N6RKM8_BRACR; Uncharacterized protein
STRING	Bra015837.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-150	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]