PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1003_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 370aa MW: 39657.8 Da PI: 8.0764

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1003_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5.1e-39	70	129	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+s++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s RrC1003_p2 70 DHPQKCPRCESAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 129 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	58	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGLTSLQVCM DSDWLQEAES SGGSMLDSTT TSPTAAEILA ACSTRPQASA MAVAAAALMD 60 GGRRLRPPHD HPQKCPRCES AHTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG 120 GCRKNKKPSS SNSSSSTSSG KKPSNIVTTN TNDLMALAQS HQNYQNASLG FSHFGGNGMM 180 GSYTALGHSN VGFLESKYGG LLSPSPRPIE FLDSKLDLMG VNNDNPVMVD HGINGDHHHH 240 HHHHMGMNHG LGLNNNNHDG FQGISPANNG NGGGGLMDIS ISQRLMLANY EHHHYNHHED 300 NQRVTSIMDV KPSPKLLSLD WQQGQGYSDG SGNGGGGRSD GGSGYINGLG STWNGLMNGY 360 GSSTKTNSMV

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGLTSLQVCM DSDWLQEAES SGGSMLDSTT TSPTAAEILA ACSTRPQASA MAVAAAALMD  60
GGRRLRPPHD HPQKCPRCES AHTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG  120
GCRKNKKPSS SNSSSSTSSG KKPSNIVTTN TNDLMALAQS HQNYQNASLG FSHFGGNGMM  180
GSYTALGHSN VGFLESKYGG LLSPSPRPIE FLDSKLDLMG VNNDNPVMVD HGINGDHHHH  240
HHHHMGMNHG LGLNNNNHDG FQGISPANNG NGGGGLMDIS ISQRLMLANY EHHHYNHHED  300
NQRVTSIMDV KPSPKLLSLD WQQGQGYSDG SGNGGGGRSD GGSGYINGLG STWNGLMNGY  360
GSSTKTNSMV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489469.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
Swissprot	Q9FM03	1e-161	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A3P5YJN3	0.0	A0A3P5YJN3_BRACM; Uncharacterized protein
STRING	Bo3g106920.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-147	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]