PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m013846 | ||||||||
Common Name | LOC8288579, RCOM_1589610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WOX | ||||||||
Protein Properties | Length: 228aa MW: 25956.2 Da PI: 9.4749 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.8e-21 | 91 | 150 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ 30170.m013846 91 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLsrygKIEGKNVFYWFQNHKARERQ 150 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.2 | 1.8e-38 | 91 | 152 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq 30170.m013846 91 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 152 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-12 | 85 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.187 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-6 | 88 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-4 | 91 | 152 | No hit | No description |
Pfam | PF00046 | 3.5E-19 | 91 | 150 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 92 | 150 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGSMKVHQLA RGFWEHEQTS LSLGCKRLRP LAPKLANNTT TTATEITNTI TSVSSFDLKS 60 FIRPESGPRK LGSSEDKKDS PPQVETHPGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE 120 QITAQLSRYG KIEGKNVFYW FQNHKARERQ KQKRNSLGLS HSPRTPGPIT TISLETKGEV 180 LEKDEDSPYK RKCRSWGFEC LELEESRSSC REEGDRTLEL FPLHPEGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m013846 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510184.1 | 1e-169 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 2e-79 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | B9R791 | 1e-168 | B9R791_RICCO; Transcription factor, putative | ||||
STRING | XP_002510184.1 | 1e-169 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 7e-76 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m013846 |
Entrez Gene | 8288579 |