PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006420
Common NameLOC8274425, RCOM_1577400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 454aa    MW: 51185 Da    PI: 5.5401
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006420genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.71.6e-18123219185
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                    +Wt++ v++Li+++  ++++   +            +kk++W+ vsk + ++g+++sp+q ++k+++lnkryk+++++ +++ +++++++ ++ d+
  30169.m006420 123 KWTDNVVRLLIAVVACVGDDGAFDGveglkrksgilQKKGKWKTVSKILISKGCHVSPQQSEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDS 218
                    7**************888888876445666777888**********************************************56999998888877 PP

       trihelix  85 l 85 
                    +
  30169.m006420 219 M 219
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-15121245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDASGLGGQF LSSPVGGLLD LESPIHRQQQ AQSGHSSLAH QRHMNLISGL GNDHQPIGLM  60
EVKGSSPRNY STNLSKGKGV SHFSPTNDGN VSEDDEPSFT EDGNGDNSSG AKSKKGSPWQ  120
RMKWTDNVVR LLIAVVACVG DDGAFDGVEG LKRKSGILQK KGKWKTVSKI LISKGCHVSP  180
QQSEDKFNDL NKRYKRLNDI LGRGTSCRVV ENPALMDSMP LSAKAKEDVR KILSSKHLFY  240
KEMCAYHNGQ MIPNCQDLDL QGFSLPLERC SRDNNGSEEE EAEGHDDSDE DESDNEDDNN  300
AIEEGERMGM YAERNKVNEE DAHLWPQSGG CNSFEVEMAG IFQDPSVSLW EKKEWINKQK  360
LQLLEQRVSI QAQAFELEKQ RFKWLRYCSK KDKEFEKLRL ENERMRLENE QSVLQLRQKQ  420
LEMDLRSSES SRDPTSLGID RLQGRDQIDL GRHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012151.10.0uncharacterized protein LOC8274425
TrEMBLB9RIA50.0B9RIA5_RICCO; Transcription factor, putative
STRINGXP_002513474.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-67sequence-specific DNA binding transcription factors