PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30068.m002527

Common Name

RCOM_1312240

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Nin-like

Protein Properties

Length: 1003aa MW: 109836 Da PI: 5.2778

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30068.m002527	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.5e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ 30068.m002527 599 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.837	589	670	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	603	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	906	989	No hit	No description
SMART	SM00666	6.0E-26	907	989	IPR000270	PB1 domain
PROSITE profile	PS51745	25.501	907	989	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.4E-28	907	989	No hit	No description
CDD	cd06407	1.58E-39	908	988	No hit	No description
Pfam	PF00564	2.2E-18	908	988	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MPEQEDDNKS KDNNTPILGV GDRERGESFM DLDLDLENSW PLDQISYLSS NINNNNNSLL 60 SPFLLTSSDQ QLPCSPLWAF SDGDDDNRNA TSASSHANTT PLAASAGLRF SDYPIFVTCY 120 NVPAENDDKR KLPSPLLGLM PIDNPDGYCI IKERMTQALR KFKDSTEQHV LAQIWAPVKN 180 GGRYVLTTSG QPFVIDPHSN GLHQYRMVSV MYMFSADGES DGELGLPGRV FRQKLPEWTP 240 NVQYYSSKEY SRRDHALNYN VQGTLALPVF EPSGQSCVGV IELIMTSQKI NYAPEVDKVC 300 KALEAVNLRS SEILDHPSTQ ICNEGRKNAL AEILEILTVV CETYKLALAQ TWIPCMHRSS 360 CTSFDGSCNG QVCMSTTDLA SYVVDPHMWG FRDACLEHHL QKGQGVAGRA FLSHNACFCQ 420 DITQFCKTEY PLVHYARLFG LTGCFAICLR SSYTGDDDYV LEFFLPPTIS DSYEQKSLLG 480 SLLATMKQHF QSLNVASGMD LKEEEGFVEI IQTSTSGRLD LRLECIQIPQ SPNSPPNTNT 540 FPKDGHVTLP HSSKHPLMVD LDVVDNGGNI GHAEGTHTSP PPVENKGTRK PSEKKRGKAE 600 KSISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKRV 660 IESVQGAEGA FDLTPLATSP LPVAVGSISW PSNLNGCNQQ NSPNCKSPEP HGEKNGSPIC 720 KTPESDGRTG AVDQLLGVRI LSQEELAQQN GFPPELGQGA KRIKAGSGSR EESVGTPTSN 780 GSCQGSPAND SMPAKDASVS PVHKQCIKAG GSPELAFQAK GELNLAAAYS IPDVLVATEA 840 REPFGEMLLE GAGSSKDLRN LCPSIADAFL DERIPETSWT NHPCQNLPST QTMVALESAI 900 SLQEIKSVTI KATYREDIIR FRISLSSGIV ELKEEVAKRL KLEVGTFDIK YLDDDHEWVL 960 IACDADLQEC IDISRSSGSN IIRLSVHDMN VNLGSSCEST GEL

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MPEQEDDNKS KDNNTPILGV GDRERGESFM DLDLDLENSW PLDQISYLSS NINNNNNSLL  60
SPFLLTSSDQ QLPCSPLWAF SDGDDDNRNA TSASSHANTT PLAASAGLRF SDYPIFVTCY  120
NVPAENDDKR KLPSPLLGLM PIDNPDGYCI IKERMTQALR KFKDSTEQHV LAQIWAPVKN  180
GGRYVLTTSG QPFVIDPHSN GLHQYRMVSV MYMFSADGES DGELGLPGRV FRQKLPEWTP  240
NVQYYSSKEY SRRDHALNYN VQGTLALPVF EPSGQSCVGV IELIMTSQKI NYAPEVDKVC  300
KALEAVNLRS SEILDHPSTQ ICNEGRKNAL AEILEILTVV CETYKLALAQ TWIPCMHRSS  360
CTSFDGSCNG QVCMSTTDLA SYVVDPHMWG FRDACLEHHL QKGQGVAGRA FLSHNACFCQ  420
DITQFCKTEY PLVHYARLFG LTGCFAICLR SSYTGDDDYV LEFFLPPTIS DSYEQKSLLG  480
SLLATMKQHF QSLNVASGMD LKEEEGFVEI IQTSTSGRLD LRLECIQIPQ SPNSPPNTNT  540
FPKDGHVTLP HSSKHPLMVD LDVVDNGGNI GHAEGTHTSP PPVENKGTRK PSEKKRGKAE  600
KSISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKRV  660
IESVQGAEGA FDLTPLATSP LPVAVGSISW PSNLNGCNQQ NSPNCKSPEP HGEKNGSPIC  720
KTPESDGRTG AVDQLLGVRI LSQEELAQQN GFPPELGQGA KRIKAGSGSR EESVGTPTSN  780
GSCQGSPAND SMPAKDASVS PVHKQCIKAG GSPELAFQAK GELNLAAAYS IPDVLVATEA  840
REPFGEMLLE GAGSSKDLRN LCPSIADAFL DERIPETSWT NHPCQNLPST QTMVALESAI  900
SLQEIKSVTI KATYREDIIR FRISLSSGIV ELKEEVAKRL KLEVGTFDIK YLDDDHEWVL  960
IACDADLQEC IDISRSSGSN IIRLSVHDMN VNLGSSCEST GEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30068.m002527

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015574468.2	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	B9RYP2	0.0	B9RYP2_RICCO; Transcription factor, putative
STRING	XP_002518861.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	30068.m002527

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]