PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30005.m001282
Common NameLOC8288334, RCOM_1213200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 414aa    MW: 44702.9 Da    PI: 4.8778
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30005.m001282genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.3e-06444539
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   +C+ +++++   +C+++  +lC +C  + H+       H++
  30005.m001282  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                   7*****************************65677777766 PP
2zf-B_box19.91.5e-064689441
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C++++++++ + C d +  lC++C    H +      H++++
  30005.m001282 46 LLCERCNSQPALIRCADERLSLCQKCDWMVHGNsnssstHKRQT 89
                   57*************************99995578888888776 PP
3CCT60.94.1e-21357400144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R+ a++RYkeK+k RkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  30005.m001282 357 RNDAVMRYKEKKKIRKFEKKVRYASRKARADVRRRVKGRFVKAG 400
                    999**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
CDDcd000219.26E-7447No hitNo description
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8734390IPR000315B-box-type zinc finger
CDDcd000213.33E-44790No hitNo description
SMARTSM003360.524890IPR000315B-box-type zinc finger
PfamPF062039.9E-16357399IPR010402CCT domain
PROSITE profilePS5101715.2357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALIRC  60
ADERLSLCQK CDWMVHGNSN SSSTHKRQTI NCYTGCPSAS ELSSLWSFVL DFPSVDGEST  120
CEQELGLMSI AEDSSTNTWG PPDKTISQNV SGAAAVNNAC EIPKSSGCVG NSSAPQLMPN  180
NLDHPAGSAN APLPKLCCPG TKGPALCEDD LYEDFNMDEV DLNLENYEEL FGIALNDSEE  240
LFENGGIDSL FGMKDMSAAD SNCQGAVAAE GSSAGLVNAV QPACSNAASA DSMMSAKTEP  300
ILCFTARPGH SNLSFSGLTG ESSAGDYQDC GASSMFLMGE PPWCPPCPES SFSSANRNDA  360
VMRYKEKKKI RKFEKKVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLNQ TRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMap30005.m001282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014105.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-157COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLB9SF290.0B9SF29_RICCO; Transcription factor, putative
STRINGXP_002524598.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-123CONSTANS-like 9