PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29950.m001149

Common Name

LOC8276523, RCOM_1121810

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

G2-like

Protein Properties

Length: 419aa MW: 46214.7 Da PI: 7.2023

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29950.m001149	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	4.9e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHe+F+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl 29950.m001149 46 KPRLKWTSDLHEHFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-30	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-16	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-25	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MYHHHQHQGK SVHSSSRMSI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTSDLHEHFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GSNKIGTGAV 120 VGDRISETNV THINNLSMGT QTNKGLHIGE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG 180 KYLQSVLEKA QETLGRQNLG SIGLEAAKVQ LSELVSKVST QCLNSAFSEL KELQGLCHQQ 240 TQTAPPTDCS MDSCLTSCEG SQKEQEIHNT GMGLRPYNGN ALLESKDITE GHVLHQTELK 300 WSEDLKDNKM FLSPLGNNAA RRNFAAERST SDLSMTVGLQ GENGNASSFS EGRYKDRNDG 360 DSFPDQTNKS LDSVKLPKGD VSQGYRLPYF ATKLDLNSHE EIDAASSCKQ LDLNGFSWN

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MYHHHQHQGK SVHSSSRMSI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTSDLHEHFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GSNKIGTGAV  120
VGDRISETNV THINNLSMGT QTNKGLHIGE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGRQNLG SIGLEAAKVQ LSELVSKVST QCLNSAFSEL KELQGLCHQQ  240
TQTAPPTDCS MDSCLTSCEG SQKEQEIHNT GMGLRPYNGN ALLESKDITE GHVLHQTELK  300
WSEDLKDNKM FLSPLGNNAA RRNFAAERST SDLSMTVGLQ GENGNASSFS EGRYKDRNDG  360
DSFPDQTNKS LDSVKLPKGD VSQGYRLPYF ATKLDLNSHE EIDAASSCKQ LDLNGFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29950.m001149

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525443.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	1e-159	PHL9_ARATH; Myb-related protein 2
TrEMBL	B9SHH4	0.0	B9SHH4_RICCO; Transcription factor, putative
STRING	XP_002525443.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-158	G2-like family protein

Link Out ? help Back to Top
Phytozome	29950.m001149
Entrez Gene	8276523

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]