PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29816.m000678
Common NameRCOM_0843040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26195.7 Da    PI: 8.7599
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29816.m000678genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-1969123256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq + Lee F+++++++ +++e LA++l+L  rqV vWFqNrRa+ k
  29816.m000678  69 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALAMQLKLRPRQVEVWFQNRRARSK 123
                    788899***********************************************98 PP
2HD-ZIP_I/II118.92.7e-3869157189
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                    +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  29816.m000678  69 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 157
                    69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-1861126IPR009057Homeodomain-like
PROSITE profilePS5007116.87665125IPR001356Homeobox domain
SMARTSM003894.5E-1767129IPR001356Homeobox domain
CDDcd000863.10E-1668126No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1769123IPR009057Homeodomain-like
PfamPF000463.3E-1669123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PfamPF021837.7E-10125159IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.8E-22125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAISPSSSSS LELTISMPGF ASSPSVPSYG EGVKDLDINQ LPAGVAEEEW ITAGIEDEEE  60
SNINGGPPRK KLRLSKEQSR LLEESFRQHH TLNPRQKEAL AMQLKLRPRQ VEVWFQNRRA  120
RSKLKQTEME CEYLKRWFGS LTEQNRRLQR EVEELRAMKV GPPTVLSPHS CEPLPASTLT  180
MCPRCERVTT STNTAAAFDK GPTRTATPAT TPTTAVATLS SKVGTPTLQS RQSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29816.m000678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526019.21e-174homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-85HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-85HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLB9SJ501e-172B9SJ50_RICCO; Homeobox protein, putative
STRINGXP_002526019.11e-173(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.18e-78homeobox-leucine zipper protein 17