PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003647
Common NameRCOM_0707900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 275aa    MW: 30570.3 Da    PI: 4.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003647genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1868118155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++y+GVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  29739.m003647  68 PKYTGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALYCLRG 118
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.68E-2868128No hitNo description
PfamPF008475.7E-1168118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2969127IPR001471AP2/ERF domain
PROSITE profilePS5103221.56269126IPR001471AP2/ERF domain
SMARTSM003802.6E-3169132IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2069127IPR016177DNA-binding domain
PRINTSPR003678.4E-97081IPR001471AP2/ERF domain
PRINTSPR003678.4E-992108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MILTSKINTL RLSDWRFRFI KSESLYIAAI FIIHTDSAPS SSSFEHPRLD QMVKTANSSS  60
TSQQASEPKY TGVRKRKWGK WVSEIRLPNS RERIWLGSYD SAEKAARAFD AALYCLRGPS  120
ARFNFPDNPP DIAGGESLSP QEIQVAAARF ANETRSITAT PTANSSTTST STSMPELSSQ  180
FMDHYYASAS SASDGAIQVD NASDRTGIDW SFLDVLDLNE GSEFGLYPSL GNNYSDYYPP  240
PPSIFDDGTR DNNDDDDHEN DGNEAYSQPS FLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15651261072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516165.21e-164ethylene-responsive transcription factor ERF017
TrEMBLB9RQZ60.0B9RQZ6_RICCO; Transcriptional factor TINY, putative
STRINGXP_002516165.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-50ERF family protein