PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29647.m002019
Common NameRCOM_0555710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 411aa    MW: 46062.2 Da    PI: 5.8859
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29647.m002019genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.6e-082266240
       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +er C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  29647.m002019 22 QERLCDYCNDTTALLYCRADSAKLCISCDREVHSTnqlfskHTRS 66
                   899*******99*********************668888888875 PP
2zf-B_box26.21.7e-0867110442
       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      C+ ++  ++++fCe+ ++ +C++C  e+H +      H+++p+
  29647.m002019  67 LLCDSCDASPASIFCETEHSVFCQNCDWEKH-NlslssvHNRRPI 110
                    57*****************************.6688899988876 PP
3CCT60.55.4e-21367409143
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                    R+ a++RYkeKrktR+++K+irYesRKa+AesR R++GrF+k 
  29647.m002019 367 RDSAISRYKEKRKTRRYDKHIRYESRKARAESRTRIRGRFAKM 409
                    899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-132168IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7082168IPR000315B-box-type zinc finger
PfamPF006434.4E-62266IPR000315B-box-type zinc finger
CDDcd000212.27E-72468No hitNo description
PROSITE profilePS5011910.72264110IPR000315B-box-type zinc finger
PfamPF006433.0E-667110IPR000315B-box-type zinc finger
CDDcd000218.26E-668110No hitNo description
SMARTSM003360.05869110IPR000315B-box-type zinc finger
PfamPF062034.8E-16367409IPR010402CCT domain
PROSITE profilePS5101715.001367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSDFGRTPDE QQTMMTQQHH QQERLCDYCN DTTALLYCRA DSAKLCISCD REVHSTNQLF  60
SKHTRSLLCD SCDASPASIF CETEHSVFCQ NCDWEKHNLS LSSVHNRRPI EGFSGFPSVS  120
ELVSILGFED LGDKKDKKAL LFNEGDNGLA SSGPDGSGFE DGYSDLLIWE TPAVVSIDDL  180
IVSSDSGPNF PALGVPPLPK AIVFRFSLFY FSCKSQNRNA VCGQHKEEIL RQLRELAGLE  240
PDPNCHNPET EPTYVFQSAA GENMQTRMTH KCCEPVARPI SSPSYEENIF NWLSDNGEAG  300
NQVSVPCTLP RSHLEESPVV PDKQSNIDGS ASYANGSHEG EPQYPASTGL ISVFPKVVSH  360
DINSQERDSA ISRYKEKRKT RRYDKHIRYE SRKARAESRT RIRGRFAKMD R
Cis-element ? help Back to Top
SourceLink
PlantRegMap29647.m002019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575619.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_015575620.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_015575621.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLB9S3V90.0B9S3V9_RICCO; Uncharacterized protein
STRINGXP_002520678.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-84B-box type zinc finger protein with CCT domain