PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28207.m000104
Common NameLOC8261758, RCOM_0200040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 430aa    MW: 48644 Da    PI: 4.7523
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28207.m000104genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.48.3e-101659340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +r C+ +++k++++fC  ++ +lC+ C ++ H+       H++v
  28207.m000104 16 ARACDGCSRKRARWFCAADDAFLCQACDDSVHSAnqlasrHERV 59
                   578*****************************667888888876 PP
2CCT69.49.2e-24375418144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  28207.m000104 375 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 418
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.1631461IPR000315B-box-type zinc finger
SMARTSM003369.1E-111461IPR000315B-box-type zinc finger
PfamPF006435.4E-81659IPR000315B-box-type zinc finger
CDDcd000212.93E-91761No hitNo description
PROSITE profilePS5101716.003375417IPR010402CCT domain
PfamPF062034.0E-18375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTNDRKAANA LSGKTARACD GCSRKRARWF CAADDAFLCQ ACDDSVHSAN QLASRHERVR  60
LETASSKISG SRNTVDSVPA WHQGFIRKAR TPRNSSNKQQ LKDEDKVLVM NPLPLVPEIG  120
GEEEGNSTFA DEDDDRLLYR VPVFDPYASE LCTDDMVTCG EGTEITMGNE EGNIVFDGYN  180
GQEGTCDDLD ILPEFFSSDM DLAEFAADVE NLLGVNEDSP DIEDLCLLHC KEEEDDQKCF  240
FDDQDKVVMK VKDEQEVEAC DHFDQAFERE SLDWSFNYES PTITADEVEE KKRVPVAINS  300
QQKKETKSTA SLLRLNYEDV INAWASQGSP WTSGSRPELN SDDCWPDCMD ICLKDGHHHP  360
YGGMGGHTRG GNGAREARVL RYKEKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTSF  420
MGNGFPYMNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385401RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap28207.m000104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533412.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLB9T5930.0B9T593_RICCO; Transcription factor, putative
STRINGXP_002533412.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-81B-box type zinc finger protein with CCT domain