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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28118.m000034 | ||||||||
Common Name | RCOM_0168650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23573.5 Da PI: 5.3139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr +k +g+Wv+eIr+p gk++r++lg+f t+e+Aa a++ a+++++g 28118.m000034 41 SCYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAALYFRG 91 79*****999.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.15E-23 | 41 | 100 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-13 | 41 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-39 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.00E-33 | 43 | 101 | No hit | No description |
PRINTS | PR00367 | 4.9E-10 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTLSPTSSKP SIICFFLSLL LTEIPLMQEQ TSSNHHGGTS SCYRGVRKRK WGKWVSEIRE 60 PGKKTRIWLG SFETPEMAAT AYDVAALYFR GREAKLNFPH LVHDLPNPAS PNADDIRMAA 120 HEAALRLRSL PIPEREGSNG GGGGGSGGSG SSSSVVGPIT VRLSPREIQA INESPLDSPK 180 MWMQMATMED SMMFANDDGV DDEWDSMQND SLWDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 43 | 99 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28118.m000034 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534096.2 | 1e-139 | ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 1e-61 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | B9T777 | 1e-158 | B9T777_RICCO; DNA binding protein, putative | ||||
STRING | XP_002534096.1 | 1e-158 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 28118.m000034 |