PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G189100.1
Common NamePHAVU_008G189100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 570aa    MW: 63315.9 Da    PI: 4.6282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G189100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.3e-52221481127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL+ k++g+  ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat+ gyWkatgkd
  Phvul.008G189100.1  22 LPLGFRFRPTDEELIDYYLRSKINGNGDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSLGYWKATGKD 111
                         699************************999.89**************96447777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++s +++l+g+kktLvfy+grapkg++t+Wvmheyr
  Phvul.008G189100.1 112 RRIKS-GSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 148
                         *****.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6015172IPR003441NAC domain
PROSITE profilePS5100556.09222172IPR003441NAC domain
PfamPF023652.8E-2723148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MGAAVVECYP PPRTAVLSLN TLPLGFRFRP TDEELIDYYL RSKINGNGDD VWVIREIDVC  60
KWEPWDLPDL SVVRNKDPEW FFFCPQDRKY PNGHRLNRAT SLGYWKATGK DRRIKSGSTL  120
IGMKKTLVFY TGRAPKGKRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKHDESLEAS  180
NGEVERAAST PMTANHSPDE IQSDSSLDPA SSSQITEGEK PLTVIPENSE EVISNIITPV  240
DSHSDGCDAR DAQNQIVELA SEQDQAFNFE DFYDPTNQQL DDKLFSPVHA HFPPEIYYQS  300
ELQYGTNDNM SDLFDSVNWD AISYDTSSLE PCSSLLNVKD HGSGSDSDVE MANMTNPQAL  360
HGYPKEAVEQ KSNVGLFQNS PEMAFSNDGS MGEVDYTTKN CGQLRNFDAF NNNGGTGIRI  420
RSRQGRTEQP NMNGMVPSQG NAPRRIRLLV GRGPPFGSEE AAKDGSCACA PEDHNSKTIN  480
TREWKASDNQ AADESSAVAD DVDEREKESP ESSDLGKITQ QHVATAESIS KDHLQVSSNR  540
GMWSYVLGVS ATVLVSVILV VNIWAYVRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-431717612169NO APICAL MERISTEM PROTEIN
1ut4_B1e-431717612169NO APICAL MERISTEM PROTEIN
1ut7_A1e-431717612169NO APICAL MERISTEM PROTEIN
1ut7_B1e-431717612169NO APICAL MERISTEM PROTEIN
4dul_A1e-431717612169NAC domain-containing protein 19
4dul_B1e-431717612169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G189100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141360.10.0hypothetical protein PHAVU_008G189100g
TrEMBLV7B6C10.0V7B6C1_PHAVU; Uncharacterized protein
STRINGXP_007141360.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-93NAC transcription factor-like 9