PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G098800.1
Common NamePHAVU_008G098800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 236aa    MW: 27053.8 Da    PI: 9.5594
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G098800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-2187146357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eq+ +Le l++  +r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  Phvul.008G098800.1  87 TRWNPTQEQIGILEMLYKGgTRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 146
                         7*****************99**************************************97 PP
2Wus_type_Homeobox115.62.4e-3787148465
   Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
  Phvul.008G098800.1  87 TRWNPTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 148
                         8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.2E-784151IPR001356Homeobox domain
SuperFamilySSF466896.42E-1385154IPR009057Homeodomain-like
CDDcd000862.13E-587148No hitNo description
PfamPF000463.5E-1987146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-888146IPR009057Homeodomain-like
PROSITE profilePS5007110.10692147IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTTSMKVHHF TRAFWEHEPF LTLGCNRLRP LAPKLPSLHT TTTPSLPFDL KSFIRPESGP  60
RKLVSLIHNN KDPPSPQAQV ETLPGGTRWN PTQEQIGILE MLYKGGTRTP NAQQIEQITV  120
QLGKYGKIEG KNVFYWFQNH KARERQKQKR NSLAFSHSPR TPTIHTVVTL ETARGEVVDR  180
DEEEGSPCKK KCRRWVFDCL EEQSMSSSSL CEEEEHRTLE LFPLQPEGRL RGLRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G098800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965280.0BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140278.11e-175hypothetical protein PHAVU_008G098800g
SwissprotQ6X7J98e-67WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLV7B3051e-174V7B305_PHAVU; Uncharacterized protein
STRINGXP_007140278.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.16e-63WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]