PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G107500.1

Common Name

PHAVU_007G107500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

S1Fa-like

Protein Properties

Length: 85aa MW: 9225.96 Da PI: 10.6282

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G107500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.7	1.9e-41	21	84	7	70
S1FA 7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +kG+nPGlivll+vggl+l+flvgn++ly+yaqk+lPPr+kkPvskkk+k+e+lkqGv++PGe Phvul.007G107500.1 21 ASKGFNPGLIVLLLVGGLMLIFLVGNFVLYTYAQKTLPPRRKKPVSKKKMKKERLKQGVSAPGE 84 57*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.0E-39	21	84	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MADDFEFADK VPPSFDSVGN ASKGFNPGLI VLLLVGGLML IFLVGNFVLY TYAQKTLPPR 60 RKKPVSKKKM KKERLKQGVS APGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G107500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090722	1e-76	BT090722.1 Soybean clone JCVI-FLGm-5M21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143854.1	4e-54	hypothetical protein PHAVU_007G107500g
Swissprot	Q7XLX6	4e-14	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	V7BG74	8e-53	V7BG74_PHAVU; Uncharacterized protein
STRING	XP_007143854.1	1e-53	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Link Out ? help Back to Top
Phytozome	Phvul.007G107500.1
Entrez Gene	18625507

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]