PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G071900.1

Common Name

PHAVU_007G071900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 992aa MW: 109857 Da PI: 5.6839

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G071900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	584	634	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Phvul.007G071900.1 584 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 634 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	573	654	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	587	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-23	892	981	No hit	No description
SMART	SM00666	1.2E-26	896	978	IPR000270	PB1 domain
PROSITE profile	PS51745	25.037	896	978	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-27	896	977	No hit	No description
Pfam	PF00564	7.2E-19	896	977	IPR000270	PB1 domain
CDD	cd06407	6.93E-38	897	977	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MSESEEENTD YVTRSKPAEE AGCTMDFDLD LETSWPLDHM AFVSNPMSPF LFSSSTSDQP 60 YSPLWAFSDG EDLKLPASAF SDCHKIFPCD SNSIAEKPEE NDDNKKPLPP LAPMPPVENV 120 GGYCVIKERM TQALRYFKEL TELNVLAQVW APVRNGNRYV LTTSGQPFVL DPHSNGLHQY 180 RTVSLMYMFD VDGENDGSLG LPGRVFQQKL PEWTPNVLYY SSKEYPRRDH AQHYNVRGSL 240 ALPVFEPALQ SCVGVLELIM TSQKINYAPE VDKICKALET VNLRSSEILD HPYTQICNEG 300 RQNALSEILE ILTVVCETHN LPLAQTWIPC KHRIVLAQGG GVKKSCSSFD GSCMGKVCMS 360 TTDIAFYIID AHLWGFREAC LEHHLQQSQG VAGRAFLSQS MCFCSNITQF CKTDYPLVHY 420 ALMFGLTSCF AICLRSSHTG TDDYVLEFFL PPRVTDFHEQ KALLASILAT MKQHFQSLKV 480 ASGVELEDGS IEIIEATIER IHTRHESIPI APSFRSPPRP DTSPNMEEEV PRDPSEQQHI 540 LMYCNGTNHG ANLRDKAGGN IDHMTTLETK NSKKPLERKR GKTEKSISLE VLQRYFAGSL 600 KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFGLNSL 660 STSPLPIAVG SLPEPSTPNK FSQQVSMGIR PSEPQMKVNE LNASKELETN RQAGMEDQLI 720 GGRIRNFERV SNDKGGSTQE VGREPKRTRT GSGSSEDSTN PTSHSSWHDS PPNESSPVKD 780 IFITSNHDQC AVLRRSSPGS TLQPATDTPN HPTSYPMPEF VSAELQEPFG GMLLEDAGSS 840 KDLRNLCPSV AEAILEDLVP EACGTNPPAL DLSPKQSMGT PNKVVTPFAA TKEMKTVTIK 900 ATYREDIIRF RVSLACGIVE LKEEVAKRLK LEVGTFDIKY LDDDHEWVLI ACDADLQECM 960 DVSRSSGSNI IRVLVHDITS NLGSSCESSG E*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MSESEEENTD YVTRSKPAEE AGCTMDFDLD LETSWPLDHM AFVSNPMSPF LFSSSTSDQP  60
YSPLWAFSDG EDLKLPASAF SDCHKIFPCD SNSIAEKPEE NDDNKKPLPP LAPMPPVENV  120
GGYCVIKERM TQALRYFKEL TELNVLAQVW APVRNGNRYV LTTSGQPFVL DPHSNGLHQY  180
RTVSLMYMFD VDGENDGSLG LPGRVFQQKL PEWTPNVLYY SSKEYPRRDH AQHYNVRGSL  240
ALPVFEPALQ SCVGVLELIM TSQKINYAPE VDKICKALET VNLRSSEILD HPYTQICNEG  300
RQNALSEILE ILTVVCETHN LPLAQTWIPC KHRIVLAQGG GVKKSCSSFD GSCMGKVCMS  360
TTDIAFYIID AHLWGFREAC LEHHLQQSQG VAGRAFLSQS MCFCSNITQF CKTDYPLVHY  420
ALMFGLTSCF AICLRSSHTG TDDYVLEFFL PPRVTDFHEQ KALLASILAT MKQHFQSLKV  480
ASGVELEDGS IEIIEATIER IHTRHESIPI APSFRSPPRP DTSPNMEEEV PRDPSEQQHI  540
LMYCNGTNHG ANLRDKAGGN IDHMTTLETK NSKKPLERKR GKTEKSISLE VLQRYFAGSL  600
KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFGLNSL  660
STSPLPIAVG SLPEPSTPNK FSQQVSMGIR PSEPQMKVNE LNASKELETN RQAGMEDQLI  720
GGRIRNFERV SNDKGGSTQE VGREPKRTRT GSGSSEDSTN PTSHSSWHDS PPNESSPVKD  780
IFITSNHDQC AVLRRSSPGS TLQPATDTPN HPTSYPMPEF VSAELQEPFG GMLLEDAGSS  840
KDLRNLCPSV AEAILEDLVP EACGTNPPAL DLSPKQSMGT PNKVVTPFAA TKEMKTVTIK  900
ATYREDIIRF RVSLACGIVE LKEEVAKRLK LEVGTFDIKY LDDDHEWVLI ACDADLQECM  960
DVSRSSGSNI IRVLVHDITS NLGSSCESSG E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G071900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143431.1	0.0	hypothetical protein PHAVU_007G071900g
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V7BCW8	0.0	V7BCW8_PHAVU; Uncharacterized protein
STRING	XP_007143431.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Phvul.007G071900.1
Entrez Gene	18625140

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]