PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.004G114100.1

Common Name

PHAVU_004G114100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 981aa MW: 109317 Da PI: 6.1295

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.004G114100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	574	625	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Phvul.004G114100.1 574 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 625 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	562	645	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-25	578	625	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.1E-27	881	962	No hit	No description
PROSITE profile	PS51745	22.936	881	963	IPR000270	PB1 domain
SMART	SM00666	2.8E-24	881	963	IPR000270	PB1 domain
SuperFamily	SSF54277	8.83E-23	881	966	No hit	No description
CDD	cd06407	1.08E-35	882	962	No hit	No description
Pfam	PF00564	1.6E-19	882	962	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MSESKEENPD LLPKSKQQEE HGFAMDFDIG FESLWSLDHI SLVSNPMSPF LLSTISEQPF 60 SPIWAFDVED ERQIRIATAG NTKAATENPV ESYENKKTVS PPFVAVPPSE NPDGYCLIKE 120 RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLY QYRTASLMYM 180 FSVDGENDEI LGLPGRVFQH RIPEWTPNVQ YYSSKEYQRL NHAQHYNVRG TLALPVFEPA 240 GQSCVAVLEL IMTSPKINYA PEVDKICKAL EAVNLRSSEI LEHPYNQICN EDRQYALAEI 300 LEILTVVCET HSLPLAQTWV PCEHRSVLAH GGGHKKSCSS FDGCCMGQVC MSITDVAFYV 360 IEAHTWGFHE ACVEHHLQQG QGVAGRAFLS HNMCFCGNIT QFCKTEYPLV HYALMFGLTS 420 SFAVCLQSSH TGNDEYVLEF FLPPRITDFN EQKRLLGSIL ATMKPHFQSL KIAAGVELEQ 480 NCSIEIIEAR KEGVQLRFES IPITQSSKSP PRHASPNMGE RLPPAPSEQQ IMVDFDDIND 540 GKNLGDTAGG HIDQNTSLEA RTKKKPSERK RGKAEKSISL DVLQHYFTGS LKDAAKSLGV 600 CPTTMKRICR QHGISRWPSR KIKKVNRSLS KLKCVIESVH GAEGAFGLNS LSTGSFPSTS 660 NKFNRQTSLT IRPSEPKINE NDFDASRASE SNRQAGVEDH FLSTRTQNPE KVINEKVVAI 720 QETGTKGTTR FRTGSGSSEE SANPSPRGSC QGSPPNEMSP PKDIFVTGIS EQCHVLRGSL 780 GSTLYSTSTP NRATAYPMPN NFVEITEPQE PFGGQLLEGV GSSKDLRNLC PSADAVLEDQ 840 VHEHWRMNHQ CSELTPVQHM DTLNNNNNNM TPFAVRKEVK SVTIKATYRE DIIRFKISLN 900 CAIVELKEEI DKRLKLEEGT FDIKYLDDDH EWVLIACDAD LQECMDISRS SGSNMIRLVV 960 HDILPILGSS CESSGDWKGC *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MSESKEENPD LLPKSKQQEE HGFAMDFDIG FESLWSLDHI SLVSNPMSPF LLSTISEQPF  60
SPIWAFDVED ERQIRIATAG NTKAATENPV ESYENKKTVS PPFVAVPPSE NPDGYCLIKE  120
RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLY QYRTASLMYM  180
FSVDGENDEI LGLPGRVFQH RIPEWTPNVQ YYSSKEYQRL NHAQHYNVRG TLALPVFEPA  240
GQSCVAVLEL IMTSPKINYA PEVDKICKAL EAVNLRSSEI LEHPYNQICN EDRQYALAEI  300
LEILTVVCET HSLPLAQTWV PCEHRSVLAH GGGHKKSCSS FDGCCMGQVC MSITDVAFYV  360
IEAHTWGFHE ACVEHHLQQG QGVAGRAFLS HNMCFCGNIT QFCKTEYPLV HYALMFGLTS  420
SFAVCLQSSH TGNDEYVLEF FLPPRITDFN EQKRLLGSIL ATMKPHFQSL KIAAGVELEQ  480
NCSIEIIEAR KEGVQLRFES IPITQSSKSP PRHASPNMGE RLPPAPSEQQ IMVDFDDIND  540
GKNLGDTAGG HIDQNTSLEA RTKKKPSERK RGKAEKSISL DVLQHYFTGS LKDAAKSLGV  600
CPTTMKRICR QHGISRWPSR KIKKVNRSLS KLKCVIESVH GAEGAFGLNS LSTGSFPSTS  660
NKFNRQTSLT IRPSEPKINE NDFDASRASE SNRQAGVEDH FLSTRTQNPE KVINEKVVAI  720
QETGTKGTTR FRTGSGSSEE SANPSPRGSC QGSPPNEMSP PKDIFVTGIS EQCHVLRGSL  780
GSTLYSTSTP NRATAYPMPN NFVEITEPQE PFGGQLLEGV GSSKDLRNLC PSADAVLEDQ  840
VHEHWRMNHQ CSELTPVQHM DTLNNNNNNM TPFAVRKEVK SVTIKATYRE DIIRFKISLN  900
CAIVELKEEI DKRLKLEEGT FDIKYLDDDH EWVLIACDAD LQECMDISRS SGSNMIRLVV  960
HDILPILGSS CESSGDWKGC *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.004G114100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007152252.1	0.0	hypothetical protein PHAVU_004G114100g
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V7C5S4	0.0	V7C5S4_PHAVU; Uncharacterized protein
STRING	XP_007152252.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Phvul.004G114100.1
Entrez Gene	18632735

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]