PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G224500.1
Common NamePHAVU_003G224500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 544aa    MW: 60327.9 Da    PI: 6.9044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G224500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Phvul.003G224500.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11546No hitNo description
CDDcd002026.01E-17655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.1E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139191.5E-7288379IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENVDYEDQ  60
KVSRVKSISL NKNKEVKLVK RKHNYDIAAS GGFIPDFNQG HRKVVDEDTS NRSSSGSAVS  120
NSESCAQFGG TDASDLTGPA QSVVWDAMVP SKKRTCSGRP KPSSVEKLTR DLCTILHEQQ  180
SYFSASSEED LLFESDTPMV SVEIGHGSIL IRHPSSITRD EESEASSLSV DNKQCLMNEA  240
YSFSSTIPLY NSDHIGMNFS SHGVEKIKSS AGQIMQQEKL ERDKSQLEKL QVPGNHNSLL  300
CSIDLNDVVN YEEFMRNLTN EEQQQLLKYL PVVDTAKFTD SLKNMFSSFQ FKENLIYFQQ  360
LLGEGVFDIS LLGKKPEEWK TLKRLVLSNM SKSKWVEQYN FLKKCEKEAG KTIGLGSTAM  420
ESSNVTNGKR MREHDSQNPK FSEMKTTMRS PKRVIIKPIC EGKEVVEEGS SFSPKSLFAL  480
PHGVGDLHVL DSFNYVGESS EDLLLDVPSN SSFPQAELLL PTLSYGAKVC TTSSSIHSTV  540
THP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G224500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155707.10.0hypothetical protein PHAVU_003G224500g
SwissprotQ8W4H11e-143GAT26_ARATH; GATA transcription factor 26
TrEMBLV7CFP70.0V7CFP7_PHAVU; Uncharacterized protein
STRINGXP_007155707.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-145GATA transcription factor 26