PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G110900.1
Common NamePHAVU_002G110900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 425aa    MW: 48789.1 Da    PI: 5.9454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G110900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.24.5e-55962251129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwdL+      ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Phvul.002G110900.1  96 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIREIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 185
                         69****************************.9***************953432234667******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk+v++ k +l+g++ktLvfykgrap+g+k+dW+mheyrle
  Phvul.002G110900.1 186 DKAVYD-KAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 225
                         ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6088245IPR003441NAC domain
PROSITE profilePS5100559.49596245IPR003441NAC domain
PfamPF023651.2E-2897224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MRISAVLPSS FIFFTNSSLL TDFFSHSSLS FSHQSSCCFL LPNYPSFFIL HLHLFINCTS  60
FNQLSHQPLL VRFSPLPKHR AYVPEFAMME SMESCVPPGF RFHPTDEELV GYYLRKKVAS  120
QKIDLDVIRE IDLYRIEPWD LQDRCRIGYE EQNEWYFFSH KDKKYPTGTR TNRATMAGFW  180
KATGRDKAVY DKAKLIGMRK TLVFYKGRAP NGQKSDWIMH EYRLESDENG PPQEEGWVVC  240
RAFKKKTTGQ TKTTEGWDSS YFFEEASGLS TVVDPIDLIS RQSHSFLAQN FMCKQEIEAD  300
NLSCMLQDPF VQLPQLESPS LPLVKRPSTV SLVSDNNEDE DIQNRLSNNN TKKVTDWRAL  360
DKFVASQLSQ EDTLETNGLS SFEPHDNHDM ALLLLQSSRD EGNKLSPFLN TSSDCDIGIC  420
VFEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-509625020173NAC domain-containing protein 19
3swm_B3e-509625020173NAC domain-containing protein 19
3swm_C3e-509625020173NAC domain-containing protein 19
3swm_D3e-509625020173NAC domain-containing protein 19
3swp_A3e-509625020173NAC domain-containing protein 19
3swp_B3e-509625020173NAC domain-containing protein 19
3swp_C3e-509625020173NAC domain-containing protein 19
3swp_D3e-509625020173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G110900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157940.10.0hypothetical protein PHAVU_002G110900g
SwissprotQ9SL411e-165NAC37_ARATH; NAC domain-containing protein 37
TrEMBLV7CIH70.0V7CIH7_PHAVU; Uncharacterized protein
STRINGXP_007157940.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-148vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]