PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G001500.1
Common NamePHAVU_002G001500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 539aa    MW: 59726.8 Da    PI: 6.3666
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G001500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Phvul.002G001500.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.7E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-11545No hitNo description
CDDcd002021.42E-16653No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.0E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139191.6E-12278372IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RTETDACGDQ  60
RVSRVKSISN KKREVTLLKQ NNNHDNVLSG GFASDYNQGG QIFLDEDVSN RSSSGSAISN  120
SESCAQYGVM DACDLTGPAQ SVVWDAMVPS KKRTCVSRPK PSSVEKLTKD LCTILHEQQS  180
YFSASSEEDL LFESETPMVS VEIGHGSILI RHPSYIVREE ESEASSFSVD NKQWPTSEAY  240
SYVGPILMHN DSSYLKPSSL EVEKIRNYTG LGKEPEHHKS EKSQHERVQN LGNHESPLCS  300
IDLNDIVNYE EFLRILTNEE QQQLLKLLPV VDTAKLPDSL KVMFNSSQFK ENLTYFQQLL  360
AEGVFDISLL GAKPEDCKTL KRLAISNLSK SKWVEHYNFL KKYENKDGKF DSFGSASTTS  420
TNVANKRTRD SRNQNFPELH TVMRSPKRMT TKAGCEGKEG VEDGACYSPK SLFALPPDAS  480
SLMFGSLNFV EEIGDQDLLL EVPSNTSFPQ AELLHPSLSL GAQASTSSSS VYSHLLHH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G001500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156588.10.0hypothetical protein PHAVU_002G001500g
SwissprotQ8W4H11e-142GAT26_ARATH; GATA transcription factor 26
TrEMBLV7CEE80.0V7CEE8_PHAVU; Uncharacterized protein
STRINGXP_007156588.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-145GATA transcription factor 26