PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G034200.1
Common NamePHAVU_001G034200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 571aa    MW: 62929.3 Da    PI: 6.1655
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G034200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084895271854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Phvul.001G034200.1 489 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 527
                         5887779******************************88 PP
2BELL63.16.1e-21360428170
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                         er++  + k++Ll ll+ Vd+ Y+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++
  Phvul.001G034200.1 360 ERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVVSAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 428
                         6889999**************************************.**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-16283428IPR006563POX domain
PfamPF075265.6E-24289427IPR006563POX domain
PROSITE profilePS5007111.078468531IPR001356Homeobox domain
CDDcd000864.22E-11471532No hitNo description
SMARTSM003896.9E-6471535IPR001356Homeobox domain
SuperFamilySSF466892.14E-15473540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-26474537IPR009057Homeodomain-like
PfamPF059209.1E-15488527IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MENNMYSASL DISGRNSAVI EEIAQHLAPK PLIQCYSFDL NNQNHIINGI PVLAAEQGES  60
TSDVHVDGCF INPARIADSN SFVTIQGESI VGDVSNPINN SAIQEHLAGG RPIASADSLA  120
DRIGLQDNLQ SSAALSHSMS ALEALGPYIF NNWQDTSNPL AATFGDHAYD ELSGIQKWNV  180
SKFLKAPEAN GTEIQAYSSI GNLVQNGWTS SNVASLGNFA FNSSNCSKEL SLSLARSPPT  240
TGQCSEMSCS NASRSMNGTS SGLDQPSCSS KELSMRLSSN KHVQFSPAIL GSRYLAGVQE  300
IFAQIATYSF ENVELINYSA SGVRAGGNKS ASAFTPNRRV ANNQNENSIY GVHVEESPSE  360
RHAADSNKSQ LLMLLQLVDN GYSQCLDEVH TVVSAFHAAT ELDPHMHAHF ALQTISLLYK  420
DLRERISNCI LAMGPDFNSL CSEEEKEWSL ETSFIQKQWA LQQLKRKDQL WRPQRGLPER  480
SVSVLRAWMF QNFLHPYPKD AEKHLLAVKS GLTRSQVSNW FINARVRLWK PMIEEMYAEM  540
SRRKACRNEE GLESTHRSRI NMNSQMLNIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14477535563Homeobox protein Meis2
3k2a_B1e-14477535563Homeobox protein Meis2
4xrs_A1e-14477534158Homeobox protein Meis1
4xrs_B1e-14477534158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G034200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160994.10.0hypothetical protein PHAVU_001G034200g
SwissprotP487311e-101ATH1_ARATH; Homeobox protein ATH1
TrEMBLV7CUC50.0V7CUC5_PHAVU; Uncharacterized protein
STRINGXP_007160994.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-104homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]