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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.7NG317900.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
LFY |
| Protein Properties |
Length: 314aa MW: 34004.6 Da PI: 9.8594 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG317900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 466.2 | 2.3e-142 | 1 | 300 | 81 | 384 |
FLO_LFY 81 mkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglge 170
m+++eldd+m++l+ +fr+d+l+Ger+G++aa+raer r+++ r + ++lda+sqe+ls+e++ aagsgg +
Pavir.7NG317900.1.p 1 MTERELDDMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HAGSTLDAASQEVLSDERD-----AAGSGGVADDA 77
9****************************************965...455.....35678***********977.....67787777555 PP
FLO_LFY 171 aelvaaeekkseeekkkaskkkqkrkkkkelkse..........ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLD 250
+ +++ +k+ ++ a+k k+ r+kk el+ ed +e+ e++ g+g +g erqrehPf+vtepgevar+kknGLD
Pavir.7NG317900.1.p 78 GRRIVTGKKQAKKGAAAARKGKKARRKK-ELRPLdvlgdendgdEDGGGGSESTESSAGGGGGGGERQREHPFVVTEPGEVARAKKNGLD 166
5555544433333333332322222222.222223555443321111112223333344777888************************* PP
FLO_LFY 251 YLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqac 340
YLf+LyeqCr fLlqvq+iak G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqac
Pavir.7NG317900.1.p 167 YLFHLYEQCRVFLLQVQSIAKLGGHKAPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQAC 256
****************************************************************************************** PP
FLO_LFY 341 ykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlersk 384
y+plv+iaar+g+d+davf+ahprL+iWYvPt+LrqLCh++r
Pavir.7NG317900.1.p 257 YAPLVEIAARHGFDVDAVFAAHPRLAIWYVPTRLRQLCHQARGG 300
****************************************9975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0031490 | Molecular Function | chromatin DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0043621 | Molecular Function | protein self-association |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MTERELDDMM AALAGLFRWD VLLGERFGLR AALRAERGRV MSLGGRFHAG STLDAASQEV 60
LSDERDAAGS GGVADDAGRR IVTGKKQAKK GAAAARKGKK ARRKKELRPL DVLGDENDGD 120
EDGGGGSEST ESSAGGGGGG GERQREHPFV VTEPGEVARA KKNGLDYLFH LYEQCRVFLL 180
QVQSIAKLGG HKAPTKVTNQ VFRYAKKCGA SYINKPKMRH YVHCYALHCL DEEASNALRR 240
AYKARGENVG AWRQACYAPL VEIAARHGFD VDAVFAAHPR LAIWYVPTRL RQLCHQARGG 300
QHAAAGLPPP PMF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
| Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY179882 | 0.0 | AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 4e-97 | floral meristem identity control protein LEAFY (LFY) |
