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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.7KG331000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LFY |
| Protein Properties |
Length: 245aa MW: 26434.3 Da PI: 10.4962 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG331000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 248 | 4.2e-76 | 1 | 239 | 1 | 282 |
FLO_LFY 1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88
mdp++ fsa+ f+wd ppa++++ ++++p a + + rele+l+ +yGvr +tva+i+elGft+stL++m+++eldd
Pavir.7KG331000.1.p 1 MDPNDaFSAAhPFRWDLG-----PPAHAAP---APPPP---PLAPQVGAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDD 79
676654766548999953.....2322221...11222...2344455679*************************************** PP
FLO_LFY 89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaee 178
+m++l+ +fr+d+l+Ger+G++aa+raer r+++ r + ++lda+sqe+ls+e++ aagsgg + ea+ +++
Pavir.7KG331000.1.p 80 MMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HAGSTLDAASQEVLSDERD-----AAGSGGVAEDEAGRRMVTG 156
*********************************965...455.....35678***********976.....8899999988888888875 PP
FLO_LFY 179 kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqk 268
kk+ ++ a ++k k+ ++k + + +rqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq+
Pavir.7KG331000.1.p 157 KKQAKK-GAAGTRKGKKARRK--------------------KEPRPLDRQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRVFLLQVQS 225
443322.22222222222222....................2234579****************************************** PP
FLO_LFY 269 iakerGekcPtkvt 282
iak G+k+Ptkv
Pavir.7KG331000.1.p 226 IAKLAGHKAPTKVR 239
************94 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MDPNDAFSAA HPFRWDLGPP AHAAPAPPPP PLAPQVGAPR ELEDLVAGYG VRPSTVARIS 60
ELGFTASTLL GMTERELDDM MAALAGLFRW DVLLGERFGL RAALRAERGR VMSLGGRFHA 120
GSTLDAASQE VLSDERDAAG SGGVAEDEAG RRMVTGKKQA KKGAAGTRKG KKARRKKEPR 180
PLDRQREHPF VVTEPGEVAR AKKNGLDYLF HLYEQCRVFL LQVQSIAKLA GHKAPTKVRT 240
LQLS*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
| Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU444050 | 0.0 | GU444050.1 Panicum virgatum floricaula/leafy-like A-type protein (FL) gene, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 3e-27 | floral meristem identity control protein LEAFY (LFY) |
