PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG209500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 208aa    MW: 22175.3 Da    PI: 10.2817
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG209500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.1e-182064347
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                         ien  +rqvtfskR+ g+lKK +EL  LC+a +a+ ifs++++l 
  Pavir.4KG209500.1.p 20 IENRDRRQVTFSKRKGGLLKKVSELILLCGAHAAITIFSKKQELP 64
                         9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.4231070IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-181069IPR002100Transcription factor, MADS-box
CDDcd001208.56E-211165No hitNo description
SuperFamilySSF554553.01E-181170IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-141232IPR002100Transcription factor, MADS-box
PfamPF003195.2E-182063IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVKPEGKKTK GKQVIEIRYI ENRDRRQVTF SKRKGGLLKK VSELILLCGA HAAITIFSKK  60
QELPEQGDNE AGKAKAAGGG NVFAMGTPSV DHVVRRFAPL PGDAGYLPAL DEAGAAEAER  120
AAGRVAAEEA RMSSIGAKVL TAVPAGPERF WWEADVEALG EAELTEFARA LRRLRNDVRR  180
HADKLQPSAA PAGTDRAGQP KASLINA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG209500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-105agamous-like MADS-box protein AGL62
TrEMBLA0A3L6RYQ71e-104A0A3L6RYQ7_PANMI; Agamous-like MADS-box protein AGL62 isoform X3
STRINGPavir.Da01739.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-16AGAMOUS-like 62